Index of /seashell/bu-github/ceabigr/code

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[ ]uniprot-retrieval.py 2024-06-06 09:14 3.1K 
[DIR]rsconnect/ 2024-06-06 09:14 -  
[IMG]plot.png 2024-06-06 09:14 1.4M 
[TXT]pca_gen_meth_corr.Rmd 2024-06-06 09:14 897  
[DIR]output/ 2024-06-06 09:14 -  
[ ]mqtl_analysis.Rmd 2024-06-06 09:14 9.1K 
[ ]gene-methylation-exp..>2024-06-06 09:14 42K 
[ ]gene-expression-anal..>2024-06-06 09:14 41K 
[ ]fem-pred-isoform-met..>2023-12-14 13:34 240K 
[ ]fem-meth-exp-xy.pdf 2023-12-14 13:34 3.6M 
[ ]exon-methylation-exp..>2024-06-06 09:14 12K 
[ ]eqtl_analysis.Rmd 2024-06-06 09:14 11K 
[ ]comprehensive-csv.Rmd 2024-06-06 09:14 3.8K 
[DIR]circos-cvir-ceabigr/ 2024-06-06 09:14 -  
[ ]TE-meth.r 2022-02-23 06:57 1.0K 
[ ]Intron-intersect-met..>2024-06-06 09:14 2.7K 
[TXT]GenomicGFF-intersect..>2024-06-06 09:14 2.5K 
[TXT]Genomic-Location-of-..>2023-12-14 13:34 32K 
[TXT]Genomic-Location-of-..>2024-06-06 09:14 22K 
[TXT]Generating-Genome-Fe..>2024-06-06 09:14 140K 
[TXT]General-Methylation-..>2024-06-06 09:14 639K 
[TXT]General-Methylation-..>2024-06-06 09:14 18K 
[TXT]Gene-intersect-meth.Rmd2024-06-06 09:14 2.0K 
[TXT]Exon-intersect-meth.Rmd2024-06-06 09:14 2.3K 
[ ]CoV_exp_x_meth.Rmd 2024-06-06 09:14 2.0K 
[ ]20220221_MethInterse..>2024-06-06 09:14 1.8K 
[ ]20220131_cvir_hisat2..>2024-06-06 09:14 4.8K 
[ ]99-SR-bu.sh 2024-06-06 09:14 253  
[TXT]98-enrichment-result..>2024-06-06 09:14 19K 
[TXT]80-hisat-deseq2.qmd 2024-06-06 09:24 576  
[DIR]76-meth-maxtranscrip..>2024-06-06 09:14 -  
[TXT]76-meth-maxtranscrip..>2024-06-06 09:14 8.2K 
[TXT]76-meth-maxtranscrip..>2024-06-06 09:14 48K 
[TXT]74-PI-enrichment.qmd 2024-06-06 09:14 1.6K 
[TXT]73-gene-methylation.qmd2024-06-06 09:14 8.1K 
[TXT]72-exon-data-rfmt.qmd 2024-06-06 09:14 8.2K 
[TXT]71-female-exon-ind.qmd 2024-06-06 09:14 12K 
[TXT]70-male-exon-fold.qmd 2024-06-06 09:14 14K 
[ ]69-wgcna.qmd 2024-06-06 09:14 13K 
[TXT]68-female-exon-fold.qmd2024-06-06 09:14 15K 
[DIR]67-exon-fold-group_f..>2024-06-06 09:14 -  
[TXT]67-exon-fold-group.qmd 2024-06-06 09:14 17K 
[TXT]67-exon-fold-group.html2024-06-06 09:14 1.4M 
[TXT]66-exon-coverage.qmd 2024-06-06 09:14 12K 
[TXT]65.5-exon-coverage.qmd 2024-06-06 09:14 5.2K 
[TXT]65.2-exon-coverage.qmd 2023-12-12 15:15 5.2K 
[DIR]65-exon-coverage_files/2024-06-06 09:14 -  
[TXT]65-exon-coverage.qmd 2023-12-14 13:44 6.9K 
[TXT]65-exon-coverage.html 2024-06-06 09:14 27K 
[DIR]64-exon-expression_f..>2024-06-06 09:14 -  
[TXT]64-exon-expression.md 2024-06-06 09:14 9.3K 
[TXT]64-exon-expression.html2024-06-06 09:14 805K 
[TXT]64-exon-expression.Rmd 2024-06-06 09:14 12K 
[TXT]63-Bogan-spurious.Rmd 2024-06-06 09:14 22K 
[DIR]61_matrix_correlatio..>2023-12-14 13:34 -  
[TXT]61_matrix_correlatio..>2023-12-14 13:34 15K 
[TXT]61_matrix_correlatio..>2023-12-14 13:34 6.4K 
[TXT]60-expression-fpkm-c..>2024-06-06 09:14 19K 
[DIR]56-matrix-synergy_fi..>2024-06-06 09:14 -  
[TXT]56-matrix-synergy.md 2024-06-06 09:14 37K 
[TXT]56-matrix-synergy.Rmd 2023-12-14 13:34 6.8K 
[ ]55-methylation-matri..>2024-06-06 09:14 4.3K 
[DIR]54-methylkit_cache/ 2024-06-06 09:14 -  
[TXT]54-methylkit.Rmd 2024-06-06 09:14 1.7K 
[DIR]53-revisit-epi-SNPs_..>2024-06-06 09:14 -  
[ ]53-revisit-epi-SNPs.md 2024-06-06 09:14 17K 
[TXT]53-revisit-epi-SNPs...>2024-04-01 08:17 1.3M 
[TXT]53-revisit-epi-SNPs.Rmd2024-06-06 09:14 14K 
[ ]52.1-rnaseq-relatedn..>2023-12-14 13:34 10K 
[ ]52-genetic-relatedne..>2024-06-06 09:14 93K 
[TXT]52-genetic-relatedne..>2024-06-06 09:14 12K 
[TXT]51-snps-genetics.md 2024-06-06 09:14 24K 
[TXT]51-snps-genetics.Rmd 2024-06-06 09:14 10K 
[TXT]50-circos-formatting..>2024-06-06 09:14 40K 
[ ]45-oyster-table.qmd 2024-06-06 09:14 689  
[ ]44-mofa.Rmd 2024-06-06 09:14 1.1K 
[ ]44-methylation-cov.qmd 2024-06-06 09:14 784  
[ ]44-methylation-cov.md 2024-06-06 09:14 3.4K 
[DIR]44-methylation-cov.m..>2024-06-06 09:14 -  
[ ]43-exon-intron-methy..>2024-06-06 09:14 5.7K 
[ ]42-predominant_isofo..>2024-06-06 09:14 35K 
[ ]42-predominant-isofo..>2023-12-14 13:34 70K 
[ ]41-expression-methyl..>2024-06-06 09:14 125  
[TXT]40-gene-methylation.Rmd2023-12-14 13:34 18K 
[TXT]34-transcript-counts..>2024-06-06 09:14 21K 
[ ]33-isoform-count_met..>2024-06-06 09:14 4.0K 
[ ]32-Transcript-viz.tex 2024-06-06 09:14 14K 
[TXT]32-Transcript-viz.log 2024-06-06 09:14 30  
[TXT]32-Transcript-viz.html 2024-06-06 09:14 1.6M 
[TXT]32-Transcript-viz.Rmd 2024-06-06 09:14 2.7K 
[TXT]31-Transcript-viz.html 2024-06-06 09:14 1.5M 
[TXT]31-Transcript-viz.Rmd 2024-06-06 09:14 3.8K 
[ ]20-BS-Snper.Rmd 2024-06-06 09:14 810  
[TXT]19-exon-expression.Rmd 2024-06-06 09:14 2.6K 
[TXT]18-differential-gene..>2023-12-14 13:34 27K 
[TXT]17.1-GO-and-GOslim-C..>2024-06-06 09:14 10K 
[TXT]17-Swiss-Prot-Annota..>2024-06-06 09:14 9.0K 
[ ]16-DML-annotation.Rmd 2024-06-06 09:14 1.2K 
[ ]15-RNAseq.Rmd 2024-06-06 09:14 48  
[ ]14-RNA-kallisto.Rmd 2024-06-06 09:14 2.3K 
[ ]13-lncRNA-kallisto.Rmd 2024-06-06 09:14 1.2K 
[ ]12-lncRNA.Rmd 2024-06-06 09:14 1.2K 
[ ]11.2-haplotype.sh 2024-06-06 09:14 1.1K 
[ ]11.1-haplotype.sh 2024-06-06 09:14 1.1K 
[ ]11-RNAseq-snps.Rmd 2024-06-06 09:14 8.1K 
[ ]10-TEm-TEcn.Rmd 2024-06-06 09:14 284  
[ ]07-TE-intersect-meth..>2024-06-06 09:14 2.2K 
[ ]04-TE-intersect-meth..>2022-02-22 08:38 1.1K 
[ ]02-te-all.sh 2024-06-06 09:14 1.3K 
[ ]02-te-all-copy.sh 2022-02-22 11:32 1.3K 
[TXT]01.01-supplemental-t..>2024-06-06 09:14 3.5K 
[TXT]00-Genomic-Location-..>2024-06-06 09:14 39K 
[ ]00-20220921-cvir-cea..>2024-06-06 09:14 3.3K 
[TXT]00-78-asca-methdiff.qmd2024-06-06 09:14 26K 
[ ]00-77-asca-exon.Rmd 2024-06-06 09:14 15K 
[TXT]00-75-max-transcript..>2024-06-06 09:14 58K 
[TXT]00-65-exon-coverage.qmd2024-06-06 09:14 24K 
[DIR]00-61_matrix_correla..>2024-06-06 09:14 -  
[TXT]00-61_matrix_correla..>2024-06-06 09:14 15K 
[TXT]00-61_matrix_correla..>2024-06-06 09:14 7.4K 
[TXT]00-56-matrix-synergy..>2024-06-06 09:14 6.8K 
[ ]00-52.1-rnaseq-relat..>2024-06-06 09:14 10K 
[ ]00-42-predominant-is..>2024-06-06 09:14 104K 
[TXT]00-40-gene-methylati..>2024-06-06 09:14 18K 
[TXT]00-18-differential-g..>2024-06-06 09:14 39K 
[ ]00-01-bismark.sh 2024-06-06 09:14 3.8K