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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| 00.00-WGBSseq-reads-..> | 2026-06-11 04:16 | 4.0K | |
| 00.00-WGBSseq-reads-..> | 2026-06-11 04:16 | 1.0M | |
| 00.00-WGBSseq-reads-..> | 2026-06-11 04:16 | 4.8K | |
| 00.10-trimming-fastp..> | 2026-06-11 04:16 | 6.9K | |
| 00.10-trimming-fastp..> | 2026-06-11 04:16 | 1.0M | |
| 00.10-trimming-fastp..> | 2026-06-11 04:16 | 7.9K | |
| 01-bismark-init.Rmd | 2026-06-11 04:16 | 1.6K | |
| 01-bismark-init.md | 2026-06-11 04:16 | 138 | |
| 01-bismark-init.sh | 2026-06-11 04:16 | 1.5K | |
| 01-bismark-init_files/ | 2026-06-11 04:16 | - | |
| 01.1-bismark-min_sco..> | 2026-06-11 04:16 | 2.5K | |
| 02-bismark-klone-arr..> | 2026-06-11 04:16 | 1.1K | |
| 02.1.sh | 2026-06-11 04:16 | 1.3K | |
| 02.test.sh | 2026-06-11 04:16 | 1.2K | |
| 03-bismark-klone-arr..> | 2026-06-11 04:16 | 1.1K | |
| 03.1.sh | 2026-06-11 04:16 | 1.3K | |
| 04-bismark-pipeline.job | 2026-06-11 04:16 | 1.1K | |
| 04.1.sh | 2026-06-11 04:16 | 1.6K | |
| 05-bismark-cov.Rmd | 2026-06-11 04:16 | 1.7K | |
| 06-bismark-pipeline.job | 2026-06-11 04:16 | 1.1K | |
| 06.1.sh | 2026-06-11 04:16 | 1.6K | |
| 07-bismark-align.job | 2026-06-11 04:16 | 1.1K | |
| 07.1.sh | 2026-06-11 04:16 | 1.3K | |
| 08-bismark-align.job | 2026-06-11 04:16 | 1.1K | |
| 08.1.sh | 2026-06-11 04:16 | 1.5K | |
| 09-meth-quant.Rmd | 2026-06-11 04:16 | 4.6K | |
| 10-methylkit.Rmd | 2026-06-11 04:16 | 5.9K | |
| 10.1-myobj_23.R | 2026-06-11 04:16 | 3.3K | |
| 10.2-myobj_23.R | 2026-06-11 04:16 | 1.0K | |
| 11-methylkit-klone.Rmd | 2026-06-11 04:16 | 12K | |
| 12-IGV-prep.Rmd | 2026-06-11 04:16 | 7.4K | |
| 13-IGV-klone.Rmd | 2026-06-11 04:16 | 3.7K | |
| 14-intersectbed.Rmd | 2026-06-11 04:16 | 1.0K | |
| 20-raw-data-qc.Rmd | 2026-06-11 04:59 | 3.3K | |
| 21-fastp-trimming.Rmd | 2026-06-11 04:59 | 3.3K | |
| 22-genome-prep.Rmd | 2026-06-11 04:59 | 3.8K | |
| 23-bismark-align.Rmd | 2026-06-11 05:00 | 3.0K | |
| 24-dedup-sort.Rmd | 2026-06-11 05:00 | 2.3K | |
| 25-meth-extract.Rmd | 2026-06-11 05:00 | 3.1K | |
| 25.1-93M-cov-recover..> | 2026-07-05 06:13 | 5.8K | |
| 25.1-93M-cov-recover..> | 2026-07-05 06:13 | 5.9K | |
| 25.2-run-goal1.sh | 2026-07-07 05:01 | 2.9K | |
| 26-methylkit-object.Rmd | 2026-07-08 19:54 | 8.7K | |
| 26-methylkit-object.md | 2026-07-08 21:27 | 13K | |
| 27-methylation-lands..> | 2026-07-07 19:03 | 6.0K | |
| 27-methylation-lands..> | 2026-07-07 07:04 | 19K | |
| 28-genomic-feature-d..> | 2026-07-07 19:03 | 7.1K | |
| 28-genomic-feature-d..> | 2026-07-07 19:31 | 12K | |
| 29-cpg-oe-mosaic.Rmd | 2026-07-07 18:50 | 6.1K | |
| 29-cpg-oe-mosaic.md | 2026-07-07 20:12 | 9.6K | |
| 30-dml-dmr-methylkit..> | 2026-07-08 19:56 | 9.6K | |
| 31-dml-dmr-annotatio..> | 2026-06-11 05:05 | 5.7K | |
| 32-functional-enrich..> | 2026-07-08 19:56 | 6.6K | |
| 33-biomarker-candida..> | 2026-07-08 19:56 | 5.9K | |
| 34-igv-visualization..> | 2026-06-11 05:07 | 4.9K | |
| 35-dml-gene-model-fi..> | 2026-07-03 22:01 | 14K | |
| 35-dml-gene-model-fi..> | 2026-07-03 22:01 | 321K | |
| 35-dml-gene-model-fi..> | 2026-07-03 22:01 | 25K | |
| 35-dml-gene-model-fi..> | 2026-07-03 22:01 | - | |
| 35a-dml-assignment-a..> | 2026-07-03 22:01 | 6.5K | |
| figure/ | 2026-07-07 07:04 | - | |
| references.bib | 2026-06-11 04:16 | 2.0K | |