FastQC - RRBS Geoduck BS-seq FASTQ data

Earlier today I finished trimming Hollie’s RRBS BS-seq FastQ data.

However, the original files were never analyzed with FastQC, so I ran it on the original files.

These libraries were originally created by Hollie Putnam using the TruSeq DNA Methylation Kit (Illumina):

• [project_juvenile_geoduck_OA/Sample_Processing (GitHub)(https://github.com/hputnam/project_juvenile_geoduck_OA/tree/master/Sample_Processing)

FastQC was run, followed by MultiQC. Analysis was run on Roadrunner.

All analysis is documented in a Jupyter Notebook; see link below.

Jupyter Notebook:

• 20180516_roadrunner_geoduck_EPI_fastqc

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Results:

FastQC output folder:

• 20180516_geoduck_EPI_fastqc/

MultiQC output folder:

• 20180516_geoduck_EPI_fastqc/multiqc_data

MultiQC report (HTML):

• multiqc_report.html