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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| 08_annotation.Rmd | 2026-07-11 23:15 | 3.6K | |
| 07_dmr.Rmd | 2026-07-11 23:15 | 2.1K | |
| 06_interaction.Rmd | 2026-07-11 23:15 | 2.8K | |
| 05_dml.Rmd | 2026-07-11 23:15 | 2.4K | |
| 04_global.Rmd | 2026-07-11 23:15 | 1.7K | |
| 03_structure.Rmd | 2026-07-11 23:15 | 2.0K | |
| 02_load_qc.Rmd | 2026-07-11 23:15 | 2.6K | |
| 01_data_metadata.Rmd | 2026-07-11 23:15 | 2.3K | |
| 00_setup.Rmd | 2026-07-11 23:15 | 2.0K | |
| notebook_post.qmd | 2026-07-11 15:52 | 8.7K | |
| methods_section.md | 2026-07-11 15:48 | 7.6K | |
| analysis_report.html | 2026-07-11 15:39 | 19K | |
| go_enrichment_signif..> | 2026-07-11 15:36 | 156K | |
| go_enrichment_all.csv | 2026-07-11 15:36 | 2.3M | |
| gene_annotation.csv | 2026-07-11 15:36 | 2.0M | |
| dml_genes_ploidy_mai..> | 2026-07-11 15:36 | 206K | |
| dml_genes_pH_within_..> | 2026-07-11 15:36 | 353K | |
| dml_genes_pH_within_..> | 2026-07-11 15:36 | 314K | |
| dml_genes_interactio..> | 2026-07-11 15:36 | 310K | |
| dml_feature_distribu..> | 2026-07-11 15:36 | 1.1K | |
| annotation_enrichmen..> | 2026-07-11 15:36 | 197K | |
| dmr_summary.png | 2026-07-11 15:29 | 47K | |
| dmr_summary.csv | 2026-07-11 15:29 | 138 | |
| dmr_ploidy_main.csv | 2026-07-11 15:29 | 18K | |
| dmr_pH_within_3N.csv | 2026-07-11 15:29 | 245K | |
| dmr_pH_within_2N.csv | 2026-07-11 15:29 | 173K | |
| interaction_analysis..> | 2026-07-11 15:23 | 561K | |
| dml_interaction.csv | 2026-07-11 15:23 | 2.1M | |
| dml_summary.csv | 2026-07-11 15:17 | 151 | |
| dml_ploidy_main.csv | 2026-07-11 15:17 | 722K | |
| dml_pH_within_3N.csv | 2026-07-11 15:17 | 2.2M | |
| dml_pH_within_2N.csv | 2026-07-11 15:17 | 1.4M | |
| dml_contrasts.png | 2026-07-11 15:17 | 463K | |
| global_methylation.png | 2026-07-11 14:57 | 98K | |
| global_methylation.csv | 2026-07-11 14:57 | 1.3K | |
| sample_structure.png | 2026-07-11 14:56 | 157K | |
| pca_coordinates.csv | 2026-07-11 14:56 | 2.2K | |
| coverage_filter_reta..> | 2026-07-11 14:50 | 676 | |
| qc_per_sample.csv | 2026-07-11 14:36 | 2.5K | |
| qc_coverage_methylat..> | 2026-07-11 14:36 | 437K | |
| sample_metadata.csv | 2026-07-11 13:46 | 2.6K | |