SRR10065371.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 39148660 lines in total Total number of methylation call strings processed: 78297320 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1565503300 Total methylated C's in CpG context: 23791735 Total methylated C's in CHG context: 642365 Total methylated C's in CHH context: 2317604 Total C to T conversions in CpG context: 159135316 Total C to T conversions in CHG context: 252442037 Total C to T conversions in CHH context: 1127174243 C methylated in CpG context: 13.0% C methylated in non-CpG context: 0.2%