SRR10065368.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 31243789 lines in total Total number of methylation call strings processed: 62487578 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1303950446 Total methylated C's in CpG context: 17777779 Total methylated C's in CHG context: 497126 Total methylated C's in CHH context: 1739126 Total C to T conversions in CpG context: 135417039 Total C to T conversions in CHG context: 211708452 Total C to T conversions in CHH context: 936810924 C methylated in CpG context: 11.6% C methylated in non-CpG context: 0.2%