SRR10065366.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 33379624 lines in total Total number of methylation call strings processed: 66759248 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1375009688 Total methylated C's in CpG context: 20042907 Total methylated C's in CHG context: 560981 Total methylated C's in CHH context: 2015940 Total C to T conversions in CpG context: 141248599 Total C to T conversions in CHG context: 222430218 Total C to T conversions in CHH context: 988711043 C methylated in CpG context: 12.4% C methylated in non-CpG context: 0.2%