CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 105541 740445 12.48 845986 2 76687 504498 13.19 581185 3 84406 700558 10.75 784964 4 86094 716751 10.72 802845 5 86019 692514 11.05 778533 6 89559 739662 10.80 829221 7 83134 684939 10.82 768073 8 84659 715172 10.58 799831 9 86328 719553 10.71 805881 10 84435 712372 10.60 796807 11 85124 711408 10.69 796532 12 86147 717482 10.72 803629 13 85326 714089 10.67 799415 14 85575 717752 10.65 803327 15 86987 722662 10.74 809649 16 87433 726713 10.74 814146 17 87000 730473 10.64 817473 18 87972 736491 10.67 824463 19 87601 736470 10.63 824071 20 88629 739589 10.70 828218 21 88786 744366 10.66 833152 22 88542 745929 10.61 834471 23 88275 744980 10.59 833255 24 89459 748805 10.67 838264 25 89144 750766 10.61 839910 26 88933 749070 10.61 838003 27 89227 753161 10.59 842388 28 88790 750992 10.57 839782 29 89141 751113 10.61 840254 30 89511 752626 10.63 842137 31 89150 751856 10.60 841006 32 89479 752286 10.63 841765 33 89778 754301 10.64 844079 34 89701 753096 10.64 842797 35 89502 754312 10.61 843814 36 90053 757900 10.62 847953 37 89265 756516 10.55 845781 38 90122 755680 10.66 845802 39 89993 757494 10.62 847487 40 90154 756708 10.65 846862 41 90882 756768 10.72 847650 42 90415 759498 10.64 849913 43 90537 758054 10.67 848591 44 90019 758365 10.61 848384 45 90949 760156 10.69 851105 46 90344 757370 10.66 847714 47 90501 757827 10.67 848328 48 90598 760683 10.64 851281 49 90505 759793 10.64 850298 50 90288 758982 10.63 849270 51 90544 758335 10.67 848879 52 90423 757884 10.66 848307 53 90694 757614 10.69 848308 54 90638 761106 10.64 851744 55 90272 758324 10.64 848596 56 90138 757884 10.63 848022 57 89855 759018 10.59 848873 58 90537 757798 10.67 848335 59 90287 756685 10.66 846972 60 90623 759671 10.66 850294 61 90160 756808 10.65 846968 62 90684 755147 10.72 845831 63 90246 757728 10.64 847974 64 90296 757117 10.66 847413 65 89798 755837 10.62 845635 66 89489 754977 10.60 844466 67 89762 755169 10.62 844931 68 89587 753315 10.63 842902 69 89667 754819 10.62 844486 70 90031 751684 10.70 841715 71 89521 750005 10.66 839526 72 88894 751641 10.58 840535 73 89452 746669 10.70 836121 74 89229 750781 10.62 840010 75 89019 747463 10.64 836482 76 88908 743510 10.68 832418 77 88441 742746 10.64 831187 78 88475 741275 10.66 829750 79 88164 742149 10.62 830313 80 87802 736197 10.66 823999 81 86952 738729 10.53 825681 82 87401 735050 10.63 822451 83 86858 732958 10.59 819816 84 86270 732353 10.54 818623 85 85171 727545 10.48 812716 86 84251 722867 10.44 807118 87 83593 721166 10.39 804759 88 82971 718402 10.35 801373 89 81199 716484 10.18 797683 90 79566 699888 10.21 779454 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 21471 1117533 1.89 1139004 2 9484 1009197 0.93 1018681 3 7980 1120601 0.71 1128581 4 6888 1133431 0.60 1140319 5 6015 1121919 0.53 1127934 6 5878 1123045 0.52 1128923 7 5478 1108073 0.49 1113551 8 5540 1135553 0.49 1141093 9 5458 1128143 0.48 1133601 10 5184 1121750 0.46 1126934 11 5352 1127711 0.47 1133063 12 5412 1132918 0.48 1138330 13 5240 1129947 0.46 1135187 14 5201 1135000 0.46 1140201 15 5333 1145492 0.46 1150825 16 5277 1145352 0.46 1150629 17 5157 1149786 0.45 1154943 18 5334 1157739 0.46 1163073 19 5349 1161289 0.46 1166638 20 5291 1162265 0.45 1167556 21 5327 1167560 0.45 1172887 22 5517 1168768 0.47 1174285 23 5549 1171390 0.47 1176939 24 5553 1175621 0.47 1181174 25 5449 1174752 0.46 1180201 26 5481 1171690 0.47 1177171 27 5542 1176018 0.47 1181560 28 5287 1173130 0.45 1178417 29 5422 1175634 0.46 1181056 30 5351 1177794 0.45 1183145 31 5454 1177148 0.46 1182602 32 5391 1177712 0.46 1183103 33 5455 1180160 0.46 1185615 34 5527 1179630 0.47 1185157 35 5553 1176960 0.47 1182513 36 5400 1180975 0.46 1186375 37 5465 1180322 0.46 1185787 38 5416 1179313 0.46 1184729 39 5519 1179513 0.47 1185032 40 5453 1179752 0.46 1185205 41 5566 1180940 0.47 1186506 42 5571 1182709 0.47 1188280 43 5603 1178831 0.47 1184434 44 5455 1179403 0.46 1184858 45 5494 1182360 0.46 1187854 46 5542 1178091 0.47 1183633 47 5538 1179522 0.47 1185060 48 5475 1180674 0.46 1186149 49 5416 1178845 0.46 1184261 50 5566 1176586 0.47 1182152 51 5650 1178678 0.48 1184328 52 5421 1179278 0.46 1184699 53 5383 1178237 0.45 1183620 54 5467 1180226 0.46 1185693 55 5575 1177782 0.47 1183357 56 5525 1177648 0.47 1183173 57 5518 1177795 0.47 1183313 58 5488 1175388 0.46 1180876 59 5378 1175998 0.46 1181376 60 5425 1178765 0.46 1184190 61 5567 1175246 0.47 1180813 62 5450 1173469 0.46 1178919 63 5494 1175049 0.47 1180543 64 5511 1172222 0.47 1177733 65 5463 1171097 0.46 1176560 66 5416 1170778 0.46 1176194 67 5390 1169027 0.46 1174417 68 5460 1166101 0.47 1171561 69 5459 1169065 0.46 1174524 70 5285 1165275 0.45 1170560 71 5463 1161967 0.47 1167430 72 5436 1163729 0.46 1169165 73 5277 1162126 0.45 1167403 74 5306 1158486 0.46 1163792 75 5414 1157999 0.47 1163413 76 5442 1150223 0.47 1155665 77 5242 1147608 0.45 1152850 78 5170 1149467 0.45 1154637 79 5346 1142204 0.47 1147550 80 5268 1144018 0.46 1149286 81 5405 1141694 0.47 1147099 82 5244 1137860 0.46 1143104 83 5202 1134715 0.46 1139917 84 5113 1133674 0.45 1138787 85 5183 1132952 0.46 1138135 86 5178 1119462 0.46 1124640 87 5151 1114774 0.46 1119925 88 5127 1109560 0.46 1114687 89 4992 1107932 0.45 1112924 90 5215 1101292 0.47 1106507 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 92511 4781133 1.90 4873644 2 40743 4298322 0.94 4339065 3 33059 4641393 0.71 4674452 4 28467 4671592 0.61 4700059 5 24688 4617795 0.53 4642483 6 24547 4782872 0.51 4807419 7 22853 4687889 0.49 4710742 8 22444 4742893 0.47 4765337 9 22134 4735588 0.47 4757722 10 21457 4731865 0.45 4753322 11 21562 4758644 0.45 4780206 12 21508 4759462 0.45 4780970 13 21159 4733722 0.44 4754881 14 21359 4742078 0.45 4763437 15 21174 4762444 0.44 4783618 16 21329 4771183 0.45 4792512 17 21274 4781561 0.44 4802835 18 21501 4811848 0.44 4833349 19 20934 4809032 0.43 4829966 20 21473 4815439 0.44 4836912 21 21180 4824078 0.44 4845258 22 21326 4817901 0.44 4839227 23 21395 4809273 0.44 4830668 24 21427 4815901 0.44 4837328 25 21369 4813124 0.44 4834493 26 21317 4803476 0.44 4824793 27 21538 4818037 0.45 4839575 28 21152 4812955 0.44 4834107 29 20987 4813444 0.43 4834431 30 21367 4822641 0.44 4844008 31 20913 4812065 0.43 4832978 32 21124 4810575 0.44 4831699 33 21506 4808507 0.45 4830013 34 21231 4802510 0.44 4823741 35 21024 4800215 0.44 4821239 36 21043 4805140 0.44 4826183 37 21110 4799124 0.44 4820234 38 21233 4796300 0.44 4817533 39 21113 4803763 0.44 4824876 40 21170 4805546 0.44 4826716 41 21103 4794158 0.44 4815261 42 21146 4801861 0.44 4823007 43 20999 4796873 0.44 4817872 44 21006 4788719 0.44 4809725 45 20809 4795673 0.43 4816482 46 21124 4786104 0.44 4807228 47 21284 4778957 0.44 4800241 48 21214 4789821 0.44 4811035 49 21387 4783192 0.45 4804579 50 21052 4773491 0.44 4794543 51 21075 4782234 0.44 4803309 52 21114 4781828 0.44 4802942 53 20856 4774033 0.43 4794889 54 21006 4776414 0.44 4797420 55 20999 4769399 0.44 4790398 56 20937 4766512 0.44 4787449 57 21142 4768363 0.44 4789505 58 21072 4763188 0.44 4784260 59 20958 4760908 0.44 4781866 60 21109 4763146 0.44 4784255 61 20712 4759030 0.43 4779742 62 20807 4752787 0.44 4773594 63 21083 4751400 0.44 4772483 64 20797 4744026 0.44 4764823 65 20929 4736637 0.44 4757566 66 21210 4741543 0.45 4762753 67 20631 4731801 0.43 4752432 68 20779 4727315 0.44 4748094 69 20771 4728110 0.44 4748881 70 20850 4723284 0.44 4744134 71 20531 4716293 0.43 4736824 72 20537 4716710 0.43 4737247 73 20550 4703091 0.44 4723641 74 20594 4694048 0.44 4714642 75 20869 4689973 0.44 4710842 76 20621 4675620 0.44 4696241 77 20569 4669894 0.44 4690463 78 20497 4671048 0.44 4691545 79 20367 4666357 0.43 4686724 80 20438 4654828 0.44 4675266 81 20281 4652343 0.43 4672624 82 20102 4645342 0.43 4665444 83 20078 4633936 0.43 4654014 84 20103 4636217 0.43 4656320 85 19797 4626854 0.43 4646651 86 19996 4606543 0.43 4626539 87 20106 4597063 0.44 4617169 88 20074 4580636 0.44 4600710 89 19433 4547224 0.43 4566657 90 19340 4452108 0.43 4471448 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20748 1122254 1.82 1143002 2 57987 798574 6.77 856561 3 64075 510494 11.15 574569 4 76225 718343 9.59 794568 5 81272 730654 10.01 811926 6 82331 695165 10.59 777496 7 86677 744867 10.42 831544 8 79889 682317 10.48 762206 9 81184 708608 10.28 789792 10 83083 711520 10.46 794603 11 81765 704806 10.40 786571 12 82040 703707 10.44 785747 13 83536 709070 10.54 792606 14 83043 709983 10.47 793026 15 83703 712183 10.52 795886 16 84723 718775 10.54 803498 17 85069 723920 10.52 808989 18 85739 722973 10.60 808712 19 85490 729613 10.49 815103 20 86395 731536 10.56 817931 21 86529 735021 10.53 821550 22 86965 737695 10.55 824660 23 86589 738541 10.49 825130 24 87016 739691 10.53 826707 25 87848 742426 10.58 830274 26 87545 744759 10.52 832304 27 86956 743240 10.47 830196 28 87161 744615 10.48 831776 29 84652 746333 10.19 830985 30 87393 744620 10.50 832013 31 87595 745768 10.51 833363 32 87630 746279 10.51 833909 33 87653 744904 10.53 832557 34 87967 745528 10.55 833495 35 87369 743611 10.51 830980 36 88013 744114 10.58 832127 37 88152 750696 10.51 838848 38 88524 748157 10.58 836681 39 88202 745213 10.58 833415 40 88132 747710 10.54 835842 41 88210 747654 10.55 835864 42 87934 745582 10.55 833516 43 89127 747185 10.66 836312 44 87878 745379 10.55 833257 45 88090 745719 10.56 833809 46 88881 746130 10.64 835011 47 88800 747573 10.62 836373 48 88720 745623 10.63 834343 49 88578 747105 10.60 835683 50 88232 746382 10.57 834614 51 88077 743960 10.59 832037 52 88928 745691 10.65 834619 53 88047 743828 10.58 831875 54 88069 742236 10.61 830305 55 88632 743108 10.66 831740 56 87861 742987 10.57 830848 57 88142 742436 10.61 830578 58 87924 743589 10.57 831513 59 88682 742206 10.67 830888 60 87718 741343 10.58 829061 61 87548 741798 10.56 829346 62 87294 740515 10.55 827809 63 87065 738703 10.54 825768 64 88123 740048 10.64 828171 65 87318 740469 10.55 827787 66 86925 735269 10.57 822194 67 87396 736339 10.61 823735 68 86708 735696 10.54 822404 69 87074 733199 10.62 820273 70 86966 731945 10.62 818911 71 86521 732850 10.56 819371 72 86426 730231 10.58 816657 73 86059 728909 10.56 814968 74 85855 728029 10.55 813884 75 86025 725527 10.60 811552 76 85300 723417 10.55 808717 77 85471 723039 10.57 808510 78 84730 720494 10.52 805224 79 84544 719704 10.51 804248 80 84680 718242 10.55 802922 81 83512 714171 10.47 797683 82 83337 711880 10.48 795217 83 83400 710101 10.51 793501 84 82361 705291 10.46 787652 85 81492 701162 10.41 782654 86 80380 697930 10.33 778310 87 79987 692547 10.35 772534 88 79139 689027 10.30 768166 89 77062 680186 10.18 757248 90 70736 0 100.00 70736 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 13562 903282 1.48 916844 2 12786 1418985 0.89 1431771 3 7509 1194905 0.62 1202414 4 5526 991616 0.55 997142 5 5788 1114666 0.52 1120454 6 5729 1157200 0.49 1162929 7 5351 1113314 0.48 1118665 8 5283 1124136 0.47 1129419 9 5136 1091662 0.47 1096798 10 5271 1114413 0.47 1119684 11 4976 1110401 0.45 1115377 12 4979 1103525 0.45 1108504 13 5032 1107121 0.45 1112153 14 5162 1115541 0.46 1120703 15 5149 1113904 0.46 1119053 16 5158 1117334 0.46 1122492 17 5274 1127470 0.47 1132744 18 5285 1129703 0.47 1134988 19 5149 1130422 0.45 1135571 20 5081 1141210 0.44 1146291 21 5224 1144031 0.45 1149255 22 5260 1145271 0.46 1150531 23 5309 1151223 0.46 1156532 24 5308 1152376 0.46 1157684 25 5327 1151030 0.46 1156357 26 5319 1159979 0.46 1165298 27 5231 1159212 0.45 1164443 28 5256 1154063 0.45 1159319 29 5223 1160765 0.45 1165988 30 5283 1160176 0.45 1165459 31 5342 1154745 0.46 1160087 32 5313 1158753 0.46 1164066 33 5181 1160546 0.44 1165727 34 5224 1159183 0.45 1164407 35 5411 1160944 0.46 1166355 36 5204 1161443 0.45 1166647 37 5395 1158292 0.46 1163687 38 5418 1162138 0.46 1167556 39 5326 1160596 0.46 1165922 40 5230 1158844 0.45 1164074 41 5279 1159178 0.45 1164457 42 5424 1159971 0.47 1165395 43 5239 1156782 0.45 1162021 44 5197 1160798 0.45 1165995 45 5288 1157307 0.45 1162595 46 5250 1156229 0.45 1161479 47 5371 1156520 0.46 1161891 48 5253 1155697 0.45 1160950 49 5276 1155211 0.45 1160487 50 5365 1155944 0.46 1161309 51 5363 1154996 0.46 1160359 52 5219 1149247 0.45 1154466 53 5181 1154327 0.45 1159508 54 5243 1151166 0.45 1156409 55 5225 1148246 0.45 1153471 56 5136 1148678 0.45 1153814 57 5327 1148336 0.46 1153663 58 5274 1146982 0.46 1152256 59 5067 1148201 0.44 1153268 60 5189 1146363 0.45 1151552 61 5154 1145664 0.45 1150818 62 5102 1146314 0.44 1151416 63 5186 1145318 0.45 1150504 64 5118 1139467 0.45 1144585 65 5029 1139526 0.44 1144555 66 5132 1137111 0.45 1142243 67 5120 1135651 0.45 1140771 68 5186 1136096 0.45 1141282 69 5035 1132531 0.44 1137566 70 5140 1129550 0.45 1134690 71 4975 1131134 0.44 1136109 72 5047 1127888 0.45 1132935 73 5109 1123728 0.45 1128837 74 5112 1123798 0.45 1128910 75 5099 1121734 0.45 1126833 76 4953 1118127 0.44 1123080 77 5023 1119400 0.45 1124423 78 5056 1114881 0.45 1119937 79 4922 1108495 0.44 1113417 80 5002 1107013 0.45 1112015 81 5025 1103405 0.45 1108430 82 4831 1099787 0.44 1104618 83 4878 1095999 0.44 1100877 84 4964 1088476 0.45 1093440 85 4726 1078127 0.44 1082853 86 4769 1078723 0.44 1083492 87 4771 1070739 0.44 1075510 88 4422 1059520 0.42 1063942 89 3892 1048676 0.37 1052568 90 2756 0 100.00 2756 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 56709 3822939 1.46 3879648 2 40351 4450996 0.90 4491347 3 31087 4684308 0.66 4715395 4 27129 4913148 0.55 4940277 5 23976 4792474 0.50 4816450 6 22618 4780390 0.47 4803008 7 22629 4819415 0.47 4842044 8 21279 4608077 0.46 4629356 9 20944 4637001 0.45 4657945 10 20858 4636076 0.45 4656934 11 20818 4605043 0.45 4625861 12 20118 4594081 0.44 4614199 13 19755 4589773 0.43 4609528 14 20351 4597146 0.44 4617497 15 20277 4606044 0.44 4626321 16 20384 4625108 0.44 4645492 17 20560 4632961 0.44 4653521 18 20533 4644375 0.44 4664908 19 20453 4647724 0.44 4668177 20 20440 4649489 0.44 4669929 21 20357 4656456 0.44 4676813 22 20232 4659914 0.43 4680146 23 20555 4666050 0.44 4686605 24 20392 4672950 0.43 4693342 25 20425 4676202 0.43 4696627 26 20239 4682444 0.43 4702683 27 20409 4687113 0.43 4707522 28 20370 4689598 0.43 4709968 29 20049 4685591 0.43 4705640 30 20373 4689092 0.43 4709465 31 20374 4682987 0.43 4703361 32 20233 4680933 0.43 4701166 33 20413 4679151 0.43 4699564 34 20296 4689628 0.43 4709924 35 20577 4680589 0.44 4701166 36 20212 4679707 0.43 4699919 37 20255 4684214 0.43 4704469 38 20016 4679651 0.43 4699667 39 20228 4673668 0.43 4693896 40 20222 4676967 0.43 4697189 41 20298 4669414 0.43 4689712 42 20129 4667785 0.43 4687914 43 20029 4665357 0.43 4685386 44 20294 4660319 0.43 4680613 45 19972 4657998 0.43 4677970 46 19975 4654510 0.43 4674485 47 20238 4652381 0.43 4672619 48 20054 4652905 0.43 4672959 49 19879 4653791 0.43 4673670 50 20268 4643849 0.43 4664117 51 20026 4639833 0.43 4659859 52 19797 4641155 0.42 4660952 53 19678 4632489 0.42 4652167 54 20184 4630280 0.43 4650464 55 19805 4626369 0.43 4646174 56 20152 4627557 0.43 4647709 57 19841 4621367 0.43 4641208 58 19833 4616204 0.43 4636037 59 19657 4609205 0.42 4628862 60 19615 4601554 0.42 4621169 61 19766 4601207 0.43 4620973 62 19725 4592469 0.43 4612194 63 19825 4588894 0.43 4608719 64 19602 4583034 0.43 4602636 65 19523 4572689 0.43 4592212 66 19624 4573402 0.43 4593026 67 19490 4570231 0.42 4589721 68 19386 4559294 0.42 4578680 69 19430 4556309 0.42 4575739 70 19251 4547152 0.42 4566403 71 19504 4542118 0.43 4561622 72 19096 4534980 0.42 4554076 73 19312 4519997 0.43 4539309 74 19040 4513987 0.42 4533027 75 19112 4496603 0.42 4515715 76 18944 4494985 0.42 4513929 77 18964 4485007 0.42 4503971 78 18823 4480361 0.42 4499184 79 18767 4460407 0.42 4479174 80 18913 4444767 0.42 4463680 81 18799 4432105 0.42 4450904 82 18638 4420878 0.42 4439516 83 18707 4397344 0.42 4416051 84 18678 4372276 0.43 4390954 85 18055 4332688 0.41 4350743 86 18012 4319101 0.42 4337113 87 17629 4292009 0.41 4309638 88 16693 4267442 0.39 4284135 89 14524 4197590 0.34 4212114 90 10632 0 100.00 10632