CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 107177 746930 12.55 854107 2 77884 510299 13.24 588183 3 84773 708487 10.69 793260 4 87442 731799 10.67 819241 5 87570 704488 11.06 792058 6 91909 755105 10.85 847014 7 85223 697975 10.88 783198 8 86324 729170 10.59 815494 9 88306 731672 10.77 819978 10 85933 726456 10.58 812389 11 86992 725451 10.71 812443 12 88015 728810 10.78 816825 13 87722 728646 10.75 816368 14 87654 731772 10.70 819426 15 88683 738655 10.72 827338 16 89644 740534 10.80 830178 17 89169 743299 10.71 832468 18 89950 751439 10.69 841389 19 89567 753902 10.62 843469 20 90161 757252 10.64 847413 21 91033 761143 10.68 852176 22 91239 760555 10.71 851794 23 91563 759807 10.75 851370 24 91567 767136 10.66 858703 25 91230 767633 10.62 858863 26 91120 764958 10.64 856078 27 92079 771581 10.66 863660 28 92203 770847 10.68 863050 29 91380 771714 10.59 863094 30 92960 772307 10.74 865267 31 92080 772352 10.65 864432 32 91718 771290 10.63 863008 33 92716 774689 10.69 867405 34 91898 773111 10.62 865009 35 92412 774569 10.66 866981 36 92399 777990 10.62 870389 37 92851 775299 10.70 868150 38 92625 776333 10.66 868958 39 93478 780646 10.69 874124 40 93380 777774 10.72 871154 41 93527 778756 10.72 872283 42 93293 781462 10.67 874755 43 92977 778315 10.67 871292 44 93022 777035 10.69 870057 45 93210 781643 10.65 874853 46 92807 777585 10.66 870392 47 93069 779028 10.67 872097 48 93593 783203 10.67 876796 49 93376 780599 10.68 873975 50 95941 769360 11.09 865301 51 93388 779408 10.70 872796 52 93337 779339 10.70 872676 53 93211 778159 10.70 871370 54 93589 779237 10.72 872826 55 93339 776087 10.74 869426 56 92647 776013 10.67 868660 57 93459 778742 10.72 872201 58 93429 778670 10.71 872099 59 93260 774920 10.74 868180 60 92858 778014 10.66 870872 61 93061 774860 10.72 867921 62 92854 772390 10.73 865244 63 93063 776457 10.70 869520 64 92585 773464 10.69 866049 65 92374 772827 10.68 865201 66 92599 771991 10.71 864590 67 92312 770801 10.70 863113 68 91748 769372 10.65 861120 69 92229 771201 10.68 863430 70 91810 769206 10.66 861016 71 91602 765345 10.69 856947 72 91917 766969 10.70 858886 73 91580 764639 10.70 856219 74 91844 766164 10.70 858008 75 91941 763623 10.75 855564 76 91832 756640 10.82 848472 77 91025 759110 10.71 850135 78 90484 758091 10.66 848575 79 90359 756360 10.67 846719 80 89809 755793 10.62 845602 81 89110 754541 10.56 843651 82 88884 752083 10.57 840967 83 88186 749032 10.53 837218 84 88050 745850 10.56 833900 85 87240 742965 10.51 830205 86 86104 734181 10.50 820285 87 86058 734733 10.48 820791 88 85146 730131 10.44 815277 89 84427 731897 10.34 816324 90 83033 710150 10.47 793183 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 21178 1131504 1.84 1152682 2 9363 1019245 0.91 1028608 3 7841 1139494 0.68 1147335 4 6697 1149617 0.58 1156314 5 5907 1140990 0.52 1146897 6 5593 1141281 0.49 1146874 7 5530 1125408 0.49 1130938 8 5374 1151167 0.46 1156541 9 5441 1148306 0.47 1153747 10 5331 1139662 0.47 1144993 11 5198 1147611 0.45 1152809 12 5345 1154502 0.46 1159847 13 5109 1150213 0.44 1155322 14 4976 1156295 0.43 1161271 15 5195 1163501 0.44 1168696 16 5256 1166443 0.45 1171699 17 5177 1169992 0.44 1175169 18 5232 1178634 0.44 1183866 19 5338 1180648 0.45 1185986 20 5333 1184495 0.45 1189828 21 5436 1192594 0.45 1198030 22 5413 1192199 0.45 1197612 23 5308 1195538 0.44 1200846 24 5504 1199224 0.46 1204728 25 5372 1198039 0.45 1203411 26 5417 1195764 0.45 1201181 27 5507 1202331 0.46 1207838 28 5487 1200028 0.46 1205515 29 5482 1201880 0.45 1207362 30 5432 1205351 0.45 1210783 31 5404 1204184 0.45 1209588 32 5495 1208737 0.45 1214232 33 5378 1206551 0.44 1211929 34 5450 1206912 0.45 1212362 35 5657 1205768 0.47 1211425 36 5544 1211698 0.46 1217242 37 5565 1206573 0.46 1212138 38 5474 1207808 0.45 1213282 39 5570 1209427 0.46 1214997 40 5455 1209630 0.45 1215085 41 5463 1208949 0.45 1214412 42 5527 1211392 0.45 1216919 43 5475 1208617 0.45 1214092 44 5415 1211092 0.45 1216507 45 5462 1210098 0.45 1215560 46 5483 1207601 0.45 1213084 47 5541 1206493 0.46 1212034 48 5536 1210544 0.46 1216080 49 5647 1206922 0.47 1212569 50 10829 1192051 0.90 1202880 51 5554 1207809 0.46 1213363 52 5582 1205071 0.46 1210653 53 5490 1205778 0.45 1211268 54 5436 1208340 0.45 1213776 55 5610 1203567 0.46 1209177 56 5443 1203159 0.45 1208602 57 5456 1204259 0.45 1209715 58 5599 1200587 0.46 1206186 59 5599 1199908 0.46 1205507 60 5477 1202433 0.45 1207910 61 5421 1201194 0.45 1206615 62 5378 1197979 0.45 1203357 63 5476 1198728 0.45 1204204 64 5417 1194069 0.45 1199486 65 5360 1195710 0.45 1201070 66 5340 1193957 0.45 1199297 67 5382 1189782 0.45 1195164 68 5533 1187876 0.46 1193409 69 5405 1188197 0.45 1193602 70 5430 1184564 0.46 1189994 71 5443 1183050 0.46 1188493 72 5366 1182006 0.45 1187372 73 5505 1183707 0.46 1189212 74 5393 1178609 0.46 1184002 75 5311 1173272 0.45 1178583 76 5410 1168955 0.46 1174365 77 5294 1169255 0.45 1174549 78 5353 1166168 0.46 1171521 79 5313 1164853 0.45 1170166 80 5392 1163892 0.46 1169284 81 5262 1161598 0.45 1166860 82 5298 1156231 0.46 1161529 83 5205 1150854 0.45 1156059 84 5256 1151228 0.45 1156484 85 5195 1146609 0.45 1151804 86 5120 1133478 0.45 1138598 87 5186 1131032 0.46 1136218 88 5085 1126134 0.45 1131219 89 5200 1125845 0.46 1131045 90 5034 1105151 0.45 1110185 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 89299 4793565 1.83 4882864 2 39807 4301278 0.92 4341085 3 32735 4641617 0.70 4674352 4 27806 4660396 0.59 4688202 5 24323 4605969 0.53 4630292 6 23845 4771023 0.50 4794868 7 21979 4676144 0.47 4698123 8 21952 4733996 0.46 4755948 9 21490 4724200 0.45 4745690 10 21089 4715375 0.45 4736464 11 21245 4740837 0.45 4762082 12 20849 4741182 0.44 4762031 13 20485 4719089 0.43 4739574 14 20533 4717432 0.43 4737965 15 20719 4737213 0.44 4757932 16 20496 4746080 0.43 4766576 17 20529 4758399 0.43 4778928 18 20839 4779746 0.43 4800585 19 20377 4782712 0.42 4803089 20 20647 4784992 0.43 4805639 21 20701 4796191 0.43 4816892 22 20596 4787636 0.43 4808232 23 20418 4777530 0.43 4797948 24 20800 4786178 0.43 4806978 25 20664 4783278 0.43 4803942 26 20736 4776017 0.43 4796753 27 20663 4787412 0.43 4808075 28 20619 4778397 0.43 4799016 29 20904 4781172 0.44 4802076 30 20823 4790371 0.43 4811194 31 20585 4784652 0.43 4805237 32 20981 4777356 0.44 4798337 33 20492 4780022 0.43 4800514 34 20745 4775344 0.43 4796089 35 20809 4765605 0.43 4786414 36 20710 4772325 0.43 4793035 37 20752 4768133 0.43 4788885 38 20667 4766303 0.43 4786970 39 20677 4777836 0.43 4798513 40 20685 4773652 0.43 4794337 41 20552 4764125 0.43 4784677 42 20787 4770271 0.43 4791058 43 20618 4759585 0.43 4780203 44 20414 4753206 0.43 4773620 45 20980 4759663 0.44 4780643 46 20681 4752682 0.43 4773363 47 20374 4747400 0.43 4767774 48 20603 4746537 0.43 4767140 49 21096 4745366 0.44 4766462 50 40525 4674619 0.86 4715144 51 20898 4738568 0.44 4759466 52 20385 4735051 0.43 4755436 53 20404 4728091 0.43 4748495 54 20479 4735536 0.43 4756015 55 20211 4727820 0.43 4748031 56 20627 4719961 0.44 4740588 57 20691 4718086 0.44 4738777 58 20338 4710353 0.43 4730691 59 20618 4705377 0.44 4725995 60 20760 4709255 0.44 4730015 61 20582 4702633 0.44 4723215 62 20376 4691154 0.43 4711530 63 20361 4695768 0.43 4716129 64 20596 4682752 0.44 4703348 65 20460 4671095 0.44 4691555 66 20272 4671825 0.43 4692097 67 20127 4664717 0.43 4684844 68 20653 4653057 0.44 4673710 69 20513 4657767 0.44 4678280 70 20426 4649959 0.44 4670385 71 19897 4637357 0.43 4657254 72 20442 4638808 0.44 4659250 73 20064 4624126 0.43 4644190 74 20247 4610296 0.44 4630543 75 20175 4606955 0.44 4627130 76 20045 4595560 0.43 4615605 77 19973 4592562 0.43 4612535 78 19862 4587473 0.43 4607335 79 20046 4578915 0.44 4598961 80 19866 4568712 0.43 4588578 81 19886 4561198 0.43 4581084 82 20011 4556484 0.44 4576495 83 19794 4542803 0.43 4562597 84 19917 4541015 0.44 4560932 85 19457 4525398 0.43 4544855 86 19692 4498903 0.44 4518595 87 19564 4496935 0.43 4516499 88 19474 4468490 0.43 4487964 89 19483 4426733 0.44 4446216 90 19016 4305710 0.44 4324726 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20681 1128306 1.80 1148987 2 58203 798326 6.80 856529 3 65124 510674 11.31 575798 4 77761 721797 9.73 799558 5 80937 734070 9.93 815007 6 79380 701197 10.17 780577 7 88801 748870 10.60 837671 8 79042 684714 10.35 763756 9 82858 712686 10.42 795544 10 84916 716202 10.60 801118 11 82782 709747 10.45 792529 12 84390 706407 10.67 790797 13 84767 711744 10.64 796511 14 84365 711890 10.60 796255 15 84642 714213 10.60 798855 16 85795 720606 10.64 806401 17 86490 722603 10.69 809093 18 86799 726057 10.68 812856 19 86776 729813 10.63 816589 20 87754 732491 10.70 820245 21 86284 735036 10.51 821320 22 88006 737681 10.66 825687 23 88654 738936 10.71 827590 24 88191 737584 10.68 825775 25 88765 741736 10.69 830501 26 89351 742705 10.74 832056 27 86346 740605 10.44 826951 28 89163 745245 10.69 834408 29 88701 745110 10.64 833811 30 88588 742315 10.66 830903 31 89500 741799 10.77 831299 32 88982 743158 10.69 832140 33 89248 740622 10.75 829870 34 89184 742407 10.72 831591 35 89087 742769 10.71 831856 36 88964 742946 10.69 831910 37 89420 743234 10.74 832654 38 89100 742869 10.71 831969 39 89658 740805 10.80 830463 40 89535 741870 10.77 831405 41 89130 742263 10.72 831393 42 89781 739924 10.82 829705 43 89958 742264 10.81 832222 44 89805 739983 10.82 829788 45 89388 737747 10.81 827135 46 89234 741022 10.75 830256 47 86763 738173 10.52 824936 48 88037 737110 10.67 825147 49 89801 739143 10.83 828944 50 89040 740506 10.73 829546 51 89668 737813 10.84 827481 52 88993 737518 10.77 826511 53 89281 737096 10.80 826377 54 89693 734752 10.88 824445 55 89464 735506 10.84 824970 56 89508 736653 10.83 826161 57 89169 735209 10.82 824378 58 89535 736363 10.84 825898 59 89054 735843 10.80 824897 60 89092 734126 10.82 823218 61 90093 735277 10.92 825370 62 89428 733452 10.87 822880 63 89690 729952 10.94 819642 64 89584 732133 10.90 821717 65 89489 731900 10.89 821389 66 88666 729460 10.84 818126 67 89086 729506 10.88 818592 68 88658 728572 10.85 817230 69 89054 728108 10.90 817162 70 89017 728017 10.90 817034 71 88823 726731 10.89 815554 72 88559 726853 10.86 815412 73 88904 726967 10.90 815871 74 88348 724875 10.86 813223 75 87963 721233 10.87 809196 76 88422 722085 10.91 810507 77 87933 719577 10.89 807510 78 87686 718289 10.88 805975 79 87674 718190 10.88 805864 80 87359 715560 10.88 802919 81 87183 714913 10.87 802096 82 87167 713408 10.89 800575 83 86896 711830 10.88 798726 84 86408 709383 10.86 795791 85 86111 706997 10.86 793108 86 85456 707923 10.77 793379 87 84985 703972 10.77 788957 88 85008 703031 10.79 788039 89 84136 699216 10.74 783352 90 80984 0 100.00 80984 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 13368 901637 1.46 915005 2 12357 1420247 0.86 1432604 3 7360 1192188 0.61 1199548 4 5435 989853 0.55 995288 5 5472 1114370 0.49 1119842 6 5376 1161960 0.46 1167336 7 5493 1122263 0.49 1127756 8 5121 1124456 0.45 1129577 9 4943 1093616 0.45 1098559 10 5349 1118092 0.48 1123441 11 5094 1114610 0.45 1119704 12 5038 1107592 0.45 1112630 13 5160 1108113 0.46 1113273 14 5158 1117585 0.46 1122743 15 4934 1113168 0.44 1118102 16 5045 1116653 0.45 1121698 17 5099 1125529 0.45 1130628 18 5246 1127620 0.46 1132866 19 5230 1128054 0.46 1133284 20 5274 1140016 0.46 1145290 21 5175 1140876 0.45 1146051 22 5278 1143646 0.46 1148924 23 5081 1144822 0.44 1149903 24 5236 1149034 0.45 1154270 25 5264 1147947 0.46 1153211 26 5293 1155426 0.46 1160719 27 5136 1154383 0.44 1159519 28 5287 1150979 0.46 1156266 29 5237 1154820 0.45 1160057 30 5229 1155635 0.45 1160864 31 5326 1149396 0.46 1154722 32 5292 1154451 0.46 1159743 33 5087 1152660 0.44 1157747 34 5300 1151684 0.46 1156984 35 5188 1153853 0.45 1159041 36 5143 1152498 0.44 1157641 37 5139 1150270 0.44 1155409 38 5233 1152056 0.45 1157289 39 5362 1149352 0.46 1154714 40 5323 1150105 0.46 1155428 41 5297 1150390 0.46 1155687 42 5192 1148238 0.45 1153430 43 5140 1144844 0.45 1149984 44 5228 1148639 0.45 1153867 45 5179 1146427 0.45 1151606 46 5296 1144315 0.46 1149611 47 5094 1143823 0.44 1148917 48 5068 1144597 0.44 1149665 49 5259 1141177 0.46 1146436 50 5196 1143693 0.45 1148889 51 5125 1141103 0.45 1146228 52 5146 1140405 0.45 1145551 53 5198 1138827 0.45 1144025 54 5162 1137763 0.45 1142925 55 5133 1137071 0.45 1142204 56 5209 1138219 0.46 1143428 57 5207 1137625 0.46 1142832 58 5157 1135312 0.45 1140469 59 5118 1136071 0.45 1141189 60 5051 1134730 0.44 1139781 61 5296 1131837 0.47 1137133 62 5297 1131287 0.47 1136584 63 5041 1131133 0.44 1136174 64 5321 1128715 0.47 1134036 65 5227 1130751 0.46 1135978 66 5153 1128672 0.45 1133825 67 5095 1124711 0.45 1129806 68 5168 1125130 0.46 1130298 69 5170 1124061 0.46 1129231 70 5103 1121280 0.45 1126383 71 4998 1122323 0.44 1127321 72 4996 1118775 0.44 1123771 73 5136 1114835 0.46 1119971 74 5073 1117895 0.45 1122968 75 5092 1114153 0.45 1119245 76 5018 1112493 0.45 1117511 77 5109 1112216 0.46 1117325 78 5029 1109705 0.45 1114734 79 5070 1105180 0.46 1110250 80 4894 1105228 0.44 1110122 81 5038 1102984 0.45 1108022 82 4960 1098751 0.45 1103711 83 4922 1098855 0.45 1103777 84 4942 1095415 0.45 1100357 85 4973 1088005 0.45 1092978 86 4889 1090230 0.45 1095119 87 4836 1085882 0.44 1090718 88 4612 1081552 0.42 1086164 89 4087 1074094 0.38 1078181 90 3256 0 100.00 3256 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 54946 3748576 1.44 3803522 2 37880 4362674 0.86 4400554 3 30422 4587411 0.66 4617833 4 26383 4813074 0.55 4839457 5 23055 4680101 0.49 4703156 6 20943 4672986 0.45 4693929 7 21901 4714513 0.46 4736414 8 19852 4488664 0.44 4508516 9 20648 4528340 0.45 4548988 10 20049 4524354 0.44 4544403 11 19892 4491091 0.44 4510983 12 19435 4477883 0.43 4497318 13 19406 4469561 0.43 4488967 14 19595 4477121 0.44 4496716 15 19156 4483310 0.43 4502466 16 19767 4497270 0.44 4517037 17 19959 4500971 0.44 4520930 18 19687 4507991 0.43 4527678 19 20047 4510916 0.44 4530963 20 19533 4511593 0.43 4531126 21 19395 4512381 0.43 4531776 22 19833 4509805 0.44 4529638 23 19628 4512390 0.43 4532018 24 19844 4516545 0.44 4536389 25 19995 4520683 0.44 4540678 26 19574 4517656 0.43 4537230 27 19334 4515599 0.43 4534933 28 19756 4520535 0.44 4540291 29 19810 4517026 0.44 4536836 30 19866 4513960 0.44 4533826 31 19519 4508454 0.43 4527973 32 19723 4504367 0.44 4524090 33 19467 4503628 0.43 4523095 34 19910 4505629 0.44 4525539 35 19726 4496016 0.44 4515742 36 19611 4493887 0.43 4513498 37 19772 4490075 0.44 4509847 38 19967 4488650 0.44 4508617 39 19757 4483356 0.44 4503113 40 19493 4480444 0.43 4499937 41 19591 4473619 0.44 4493210 42 19541 4467123 0.44 4486664 43 19936 4461312 0.44 4481248 44 19458 4456224 0.43 4475682 45 19671 4449639 0.44 4469310 46 19657 4444900 0.44 4464557 47 19121 4434435 0.43 4453556 48 18720 4442388 0.42 4461108 49 19342 4440968 0.43 4460310 50 19538 4433589 0.44 4453127 51 19073 4431241 0.43 4450314 52 19184 4430933 0.43 4450117 53 19252 4424163 0.43 4443415 54 19026 4420344 0.43 4439370 55 19207 4418093 0.43 4437300 56 19285 4415281 0.43 4434566 57 19105 4410692 0.43 4429797 58 19162 4408969 0.43 4428131 59 19242 4402534 0.44 4421776 60 19184 4397906 0.43 4417090 61 19058 4392475 0.43 4411533 62 19413 4388222 0.44 4407635 63 19002 4385898 0.43 4404900 64 18840 4372575 0.43 4391415 65 18882 4366335 0.43 4385217 66 18768 4367217 0.43 4385985 67 19091 4362952 0.44 4382043 68 18820 4357864 0.43 4376684 69 19019 4351195 0.44 4370214 70 18712 4345448 0.43 4364160 71 18754 4338072 0.43 4356826 72 18772 4332074 0.43 4350846 73 18817 4327322 0.43 4346139 74 18740 4318984 0.43 4337724 75 18776 4308022 0.43 4326798 76 18559 4301224 0.43 4319783 77 18400 4297879 0.43 4316279 78 18372 4288057 0.43 4306429 79 18779 4278685 0.44 4297464 80 18209 4272956 0.42 4291165 81 18344 4266229 0.43 4284573 82 18367 4255583 0.43 4273950 83 18347 4243741 0.43 4262088 84 18263 4228625 0.43 4246888 85 17856 4206363 0.42 4224219 86 17975 4203734 0.43 4221709 87 17750 4187152 0.42 4204902 88 17077 4178434 0.41 4195511 89 14950 4143509 0.36 4158459 90 11209 0 100.00 11209