CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 115306 683080 14.44 798386 2 70066 473906 12.88 543972 3 79853 668068 10.68 747921 4 84721 672734 11.18 757455 5 83030 659391 11.18 742421 6 87345 706977 11.00 794322 7 80819 645119 11.13 725938 8 83504 684164 10.88 767668 9 85157 692585 10.95 777742 10 81356 676668 10.73 758024 11 82482 683119 10.77 765601 12 81669 666169 10.92 747838 13 82050 674853 10.84 756903 14 82661 683195 10.79 765856 15 83278 678831 10.93 762109 16 84223 685101 10.95 769324 17 83932 687963 10.87 771895 18 84027 691846 10.83 775873 19 84603 694981 10.85 779584 20 84498 697913 10.80 782411 21 85234 699476 10.86 784710 22 85175 698300 10.87 783475 23 85084 696849 10.88 781933 24 85511 699864 10.89 785375 25 85783 702870 10.88 788653 26 84791 697679 10.84 782470 27 85974 702674 10.90 788648 28 85286 705705 10.78 790991 29 85564 705095 10.82 790659 30 84994 704451 10.77 789445 31 85929 705090 10.86 791019 32 85330 705351 10.79 790681 33 86485 706905 10.90 793390 34 85874 705217 10.86 791091 35 85458 705570 10.80 791028 36 86694 706090 10.94 792784 37 85696 707573 10.80 793269 38 86384 705735 10.91 792119 39 85857 707883 10.82 793740 40 86614 707681 10.90 794295 41 86190 707060 10.87 793250 42 86541 706751 10.91 793292 43 86742 706478 10.94 793220 44 86475 706815 10.90 793290 45 86587 707383 10.91 793970 46 86533 708843 10.88 795376 47 86378 707475 10.88 793853 48 86237 708826 10.85 795063 49 86228 708285 10.85 794513 50 85936 704388 10.87 790324 51 86574 704336 10.95 790910 52 86832 706216 10.95 793048 53 86147 705096 10.89 791243 54 86260 706144 10.89 792404 55 86035 705175 10.87 791210 56 86346 703049 10.94 789395 57 86097 705745 10.87 791842 58 86063 703744 10.90 789807 59 86007 702102 10.91 788109 60 86104 704087 10.90 790191 61 85937 701218 10.92 787155 62 86140 700998 10.94 787138 63 85442 701094 10.86 786536 64 85273 702495 10.82 787768 65 85396 696934 10.92 782330 66 85538 700601 10.88 786139 67 84717 696964 10.84 781681 68 85420 696956 10.92 782376 69 85588 697473 10.93 783061 70 84604 695644 10.84 780248 71 84623 692016 10.90 776639 72 84671 693171 10.89 777842 73 84211 690488 10.87 774699 74 84616 689988 10.92 774604 75 84261 689344 10.89 773605 76 83580 684990 10.87 768570 77 83951 684424 10.93 768375 78 83496 684120 10.88 767616 79 83289 682838 10.87 766127 80 83071 679826 10.89 762897 81 82263 680303 10.79 762566 82 82753 678293 10.87 761046 83 82218 673898 10.87 756116 84 81521 673276 10.80 754797 85 80661 670915 10.73 751576 86 79308 666410 10.64 745718 87 79428 665663 10.66 745091 88 78939 662231 10.65 741170 89 77382 661981 10.47 739363 90 75136 644405 10.44 719541 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 23189 1124547 2.02 1147736 2 8999 951461 0.94 960460 3 7321 1070172 0.68 1077493 4 6337 1071157 0.59 1077494 5 5608 1057966 0.53 1063574 6 5310 1052071 0.50 1057381 7 5220 1054701 0.49 1059921 8 5053 1067697 0.47 1072750 9 5073 1066936 0.47 1072009 10 4867 1047106 0.46 1051973 11 4941 1041270 0.47 1046211 12 4775 1052451 0.45 1057226 13 4671 1051781 0.44 1056452 14 4760 1059875 0.45 1064635 15 4820 1061164 0.45 1065984 16 4818 1063289 0.45 1068107 17 4999 1067861 0.47 1072860 18 4779 1070541 0.44 1075320 19 4869 1075967 0.45 1080836 20 4918 1077382 0.45 1082300 21 4929 1080341 0.45 1085270 22 5093 1082527 0.47 1087620 23 4922 1082761 0.45 1087683 24 4824 1085447 0.44 1090271 25 4895 1082718 0.45 1087613 26 4805 1082397 0.44 1087202 27 4882 1087045 0.45 1091927 28 4967 1085625 0.46 1090592 29 5019 1084538 0.46 1089557 30 5000 1087516 0.46 1092516 31 4900 1089332 0.45 1094232 32 4804 1085751 0.44 1090555 33 4980 1087606 0.46 1092586 34 4939 1089294 0.45 1094233 35 5002 1088292 0.46 1093294 36 4987 1091193 0.45 1096180 37 4946 1089604 0.45 1094550 38 5126 1086314 0.47 1091440 39 4943 1090910 0.45 1095853 40 4805 1091779 0.44 1096584 41 4966 1087768 0.45 1092734 42 5063 1090201 0.46 1095264 43 4915 1088865 0.45 1093780 44 4986 1089133 0.46 1094119 45 4932 1091073 0.45 1096005 46 4913 1092427 0.45 1097340 47 4897 1088246 0.45 1093143 48 5079 1089529 0.46 1094608 49 4927 1086897 0.45 1091824 50 5021 1087076 0.46 1092097 51 4995 1089146 0.46 1094141 52 4898 1086519 0.45 1091417 53 5026 1085915 0.46 1090941 54 5020 1088354 0.46 1093374 55 5114 1088007 0.47 1093121 56 4940 1086635 0.45 1091575 57 4974 1084727 0.46 1089701 58 5089 1084589 0.47 1089678 59 4933 1083819 0.45 1088752 60 5065 1084788 0.46 1089853 61 4903 1083121 0.45 1088024 62 4853 1080711 0.45 1085564 63 4945 1079381 0.46 1084326 64 4997 1080928 0.46 1085925 65 4916 1077565 0.45 1082481 66 4788 1078245 0.44 1083033 67 4932 1074872 0.46 1079804 68 4907 1073179 0.46 1078086 69 4814 1073036 0.45 1077850 70 4946 1072348 0.46 1077294 71 4800 1067757 0.45 1072557 72 4878 1067205 0.46 1072083 73 4834 1069051 0.45 1073885 74 4863 1064501 0.45 1069364 75 4872 1063664 0.46 1068536 76 4833 1057818 0.45 1062651 77 4819 1055421 0.45 1060240 78 4833 1054420 0.46 1059253 79 4815 1051956 0.46 1056771 80 4904 1051749 0.46 1056653 81 4697 1048673 0.45 1053370 82 4756 1044393 0.45 1049149 83 4762 1038498 0.46 1043260 84 4669 1039906 0.45 1044575 85 4775 1038996 0.46 1043771 86 4562 1031157 0.44 1035719 87 4585 1026749 0.44 1031334 88 4536 1021018 0.44 1025554 89 4587 1017395 0.45 1021982 90 4659 1008821 0.46 1013480 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 98891 4725913 2.05 4824804 2 38276 3998313 0.95 4036589 3 30558 4303588 0.71 4334146 4 25461 4224204 0.60 4249665 5 22150 4174459 0.53 4196609 6 21412 4323835 0.49 4345247 7 20202 4227535 0.48 4247737 8 19994 4317275 0.46 4337269 9 20145 4357893 0.46 4378038 10 19487 4295289 0.45 4314776 11 19472 4349323 0.45 4368795 12 19009 4308565 0.44 4327574 13 18684 4261828 0.44 4280512 14 19171 4291848 0.44 4311019 15 18839 4281263 0.44 4300102 16 18870 4299628 0.44 4318498 17 18906 4305345 0.44 4324251 18 19050 4331644 0.44 4350694 19 18779 4336642 0.43 4355421 20 18884 4336319 0.43 4355203 21 18877 4350313 0.43 4369190 22 19074 4348758 0.44 4367832 23 18655 4331558 0.43 4350213 24 19079 4332543 0.44 4351622 25 18733 4329812 0.43 4348545 26 18980 4322084 0.44 4341064 27 18806 4333198 0.43 4352004 28 19013 4329907 0.44 4348920 29 18646 4329628 0.43 4348274 30 18748 4338352 0.43 4357100 31 18987 4336322 0.44 4355309 32 18697 4327676 0.43 4346373 33 18999 4331842 0.44 4350841 34 18569 4328707 0.43 4347276 35 18832 4325423 0.43 4344255 36 18793 4325117 0.43 4343910 37 18936 4327628 0.44 4346564 38 18800 4321748 0.43 4340548 39 18511 4325116 0.43 4343627 40 18868 4329232 0.43 4348100 41 18924 4321328 0.44 4340252 42 19487 4316897 0.45 4336384 43 19053 4320104 0.44 4339157 44 18610 4314175 0.43 4332785 45 18669 4316483 0.43 4335152 46 18885 4312876 0.44 4331761 47 18683 4312465 0.43 4331148 48 18741 4313097 0.43 4331838 49 18717 4313561 0.43 4332278 50 18697 4301414 0.43 4320111 51 18698 4304748 0.43 4323446 52 18408 4302497 0.43 4320905 53 18526 4295415 0.43 4313941 54 18855 4299269 0.44 4318124 55 18690 4297954 0.43 4316644 56 18575 4290652 0.43 4309227 57 18763 4296349 0.43 4315112 58 18728 4289901 0.43 4308629 59 18681 4284072 0.43 4302753 60 18609 4283842 0.43 4302451 61 18561 4280130 0.43 4298691 62 18852 4267936 0.44 4286788 63 18438 4266388 0.43 4284826 64 18564 4267200 0.43 4285764 65 18598 4259954 0.43 4278552 66 18474 4261206 0.43 4279680 67 18334 4255928 0.43 4274262 68 18294 4250909 0.43 4269203 69 18280 4253235 0.43 4271515 70 18344 4246800 0.43 4265144 71 18223 4229657 0.43 4247880 72 18334 4228698 0.43 4247032 73 18240 4218801 0.43 4237041 74 18145 4207052 0.43 4225197 75 18121 4202662 0.43 4220783 76 17884 4190394 0.42 4208278 77 18065 4181337 0.43 4199402 78 18149 4183042 0.43 4201191 79 18322 4186005 0.44 4204327 80 17975 4168665 0.43 4186640 81 17599 4167262 0.42 4184861 82 17836 4158155 0.43 4175991 83 17726 4145807 0.43 4163533 84 17803 4143008 0.43 4160811 85 17702 4138923 0.43 4156625 86 17495 4115800 0.42 4133295 87 17464 4113512 0.42 4130976 88 17486 4098039 0.42 4115525 89 17382 4073571 0.42 4090953 90 17295 3990938 0.43 4008233 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 16525 960701 1.69 977226 2 44506 759509 5.54 804015 3 53535 482773 9.98 536308 4 65075 686632 8.66 751707 5 69806 690028 9.19 759834 6 71467 664791 9.71 736258 7 75369 712767 9.56 788136 8 69691 644617 9.76 714308 9 72787 681617 9.65 754404 10 76104 684160 10.01 760264 11 74938 666125 10.11 741063 12 76680 673361 10.22 750041 13 76317 655811 10.42 732128 14 76724 662704 10.38 739428 15 78033 672519 10.40 750552 16 78022 667520 10.47 745542 17 79638 673939 10.57 753577 18 78780 675302 10.45 754082 19 80030 680531 10.52 760561 20 80110 682803 10.50 762913 21 80430 682934 10.54 763364 22 81580 683445 10.66 765025 23 81331 684186 10.62 765517 24 81177 682050 10.64 763227 25 81746 684413 10.67 766159 26 81331 685176 10.61 766507 27 81743 683785 10.68 765528 28 82207 686221 10.70 768428 29 81879 685531 10.67 767410 30 81698 684569 10.66 766267 31 82129 683356 10.73 765485 32 82234 685870 10.71 768104 33 82192 681787 10.76 763979 34 82493 683228 10.77 765721 35 82064 683300 10.72 765364 36 82636 681758 10.81 764394 37 82910 683103 10.82 766013 38 82475 682339 10.78 764814 39 82596 681725 10.81 764321 40 83052 680036 10.88 763088 41 83050 681042 10.87 764092 42 82949 678436 10.89 761385 43 83278 680267 10.91 763545 44 82665 679360 10.85 762025 45 82825 676647 10.91 759472 46 83180 679460 10.91 762640 47 83263 679900 10.91 763163 48 83164 678272 10.92 761436 49 83466 677284 10.97 760750 50 83071 676800 10.93 759871 51 82510 671833 10.94 754343 52 82204 671370 10.91 753574 53 83161 670924 11.03 754085 54 82251 672257 10.90 754508 55 83250 671274 11.03 754524 56 82037 671130 10.89 753167 57 82161 669565 10.93 751726 58 82662 671155 10.97 753817 59 81918 668483 10.92 750401 60 81873 666278 10.94 748151 61 82302 665722 11.00 748024 62 82040 662359 11.02 744399 63 81612 660221 11.00 741833 64 81723 660649 11.01 742372 65 81568 661145 10.98 742713 66 81370 659025 10.99 740395 67 80959 658197 10.95 739156 68 80725 656776 10.95 737501 69 80326 654498 10.93 734824 70 80528 653864 10.97 734392 71 81028 650686 11.07 731714 72 80111 646186 11.03 726297 73 80403 647599 11.04 728002 74 79893 644920 11.02 724813 75 79085 641587 10.97 720672 76 79274 641960 10.99 721234 77 78947 640243 10.98 719190 78 78405 638862 10.93 717267 79 78197 635988 10.95 714185 80 77609 633480 10.91 711089 81 77376 628568 10.96 705944 82 77150 625000 10.99 702150 83 76597 622179 10.96 698776 84 76615 616949 11.05 693564 85 75050 613036 10.91 688086 86 73417 608704 10.76 682121 87 73320 602759 10.84 676079 88 72401 597963 10.80 670364 89 70955 588805 10.75 659760 90 65227 0 100.00 65227 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 13164 834341 1.55 847505 2 12312 1273528 0.96 1285840 3 7551 1170145 0.64 1177696 4 5219 924746 0.56 929965 5 5374 1052185 0.51 1057559 6 5277 1083031 0.48 1088308 7 5191 1044778 0.49 1049969 8 4996 1045256 0.48 1050252 9 4828 1030611 0.47 1035439 10 4687 1036831 0.45 1041518 11 4999 1040381 0.48 1045380 12 4687 1018367 0.46 1023054 13 4615 1014125 0.45 1018740 14 4792 1019914 0.47 1024706 15 4602 1025059 0.45 1029661 16 4661 1032826 0.45 1037487 17 4642 1029424 0.45 1034066 18 4811 1037246 0.46 1042057 19 4733 1036406 0.45 1041139 20 4679 1042293 0.45 1046972 21 4680 1047177 0.44 1051857 22 4776 1042105 0.46 1046881 23 4810 1047496 0.46 1052306 24 4813 1051186 0.46 1055999 25 4726 1047230 0.45 1051956 26 4898 1051885 0.46 1056783 27 4755 1050544 0.45 1055299 28 4760 1048982 0.45 1053742 29 4807 1050609 0.46 1055416 30 4707 1052505 0.45 1057212 31 4747 1047482 0.45 1052229 32 4828 1047755 0.46 1052583 33 4755 1048329 0.45 1053084 34 4597 1047377 0.44 1051974 35 4767 1048198 0.45 1052965 36 4700 1048426 0.45 1053126 37 4692 1046920 0.45 1051612 38 4816 1047805 0.46 1052621 39 4931 1048903 0.47 1053834 40 4709 1044717 0.45 1049426 41 4680 1044041 0.45 1048721 42 4609 1044395 0.44 1049004 43 4633 1041584 0.44 1046217 44 4783 1043432 0.46 1048215 45 4813 1041790 0.46 1046603 46 4669 1041456 0.45 1046125 47 4753 1043673 0.45 1048426 48 4829 1042734 0.46 1047563 49 4736 1037534 0.45 1042270 50 4786 1039055 0.46 1043841 51 4625 1036641 0.44 1041266 52 4809 1033017 0.46 1037826 53 4760 1034832 0.46 1039592 54 4729 1033337 0.46 1038066 55 4649 1030336 0.45 1034985 56 4694 1032568 0.45 1037262 57 4669 1029465 0.45 1034134 58 4647 1026839 0.45 1031486 59 4725 1026679 0.46 1031404 60 4656 1023167 0.45 1027823 61 4664 1020775 0.45 1025439 62 4642 1021909 0.45 1026551 63 4665 1018738 0.46 1023403 64 4524 1016109 0.44 1020633 65 4676 1014363 0.46 1019039 66 4503 1015561 0.44 1020064 67 4567 1011185 0.45 1015752 68 4375 1009689 0.43 1014064 69 4512 1007523 0.45 1012035 70 4560 1004231 0.45 1008791 71 4426 1002855 0.44 1007281 72 4583 999145 0.46 1003728 73 4538 993764 0.45 998302 74 4448 995427 0.44 999875 75 4480 991987 0.45 996467 76 4418 985872 0.45 990290 77 4368 986116 0.44 990484 78 4391 981335 0.45 985726 79 4366 979353 0.44 983719 80 4290 974405 0.44 978695 81 4217 971195 0.43 975412 82 4272 963944 0.44 968216 83 4234 958988 0.44 963222 84 4305 954469 0.45 958774 85 4155 940460 0.44 944615 86 4208 937193 0.45 941401 87 4190 930085 0.45 934275 88 3919 917885 0.43 921804 89 3426 905248 0.38 908674 90 2573 0 100.00 2573 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 58060 3681401 1.55 3739461 2 39504 4079533 0.96 4119037 3 27157 4030262 0.67 4057419 4 24594 4342394 0.56 4366988 5 21470 4249087 0.50 4270557 6 20792 4280101 0.48 4300893 7 20732 4341328 0.48 4362060 8 19315 4150355 0.46 4169670 9 19596 4230018 0.46 4249614 10 18926 4168196 0.45 4187122 11 18491 4131104 0.45 4149595 12 18027 4098500 0.44 4116527 13 17308 4018290 0.43 4035598 14 18221 4053631 0.45 4071852 15 18023 4085200 0.44 4103223 16 17966 4089036 0.44 4107002 17 18339 4110451 0.44 4128790 18 18311 4114342 0.44 4132653 19 18418 4122537 0.44 4140955 20 18113 4124927 0.44 4143040 21 17841 4123532 0.43 4141373 22 17914 4114409 0.43 4132323 23 17855 4117711 0.43 4135566 24 18266 4114255 0.44 4132521 25 17909 4114592 0.43 4132501 26 17856 4119616 0.43 4137472 27 17688 4119707 0.43 4137395 28 17864 4126465 0.43 4144329 29 18039 4124526 0.44 4142565 30 17906 4123030 0.43 4140936 31 18186 4118281 0.44 4136467 32 17884 4113156 0.43 4131040 33 17888 4110280 0.43 4128168 34 17766 4106998 0.43 4124764 35 17916 4101878 0.43 4119794 36 17862 4099424 0.43 4117286 37 17966 4102274 0.44 4120240 38 17912 4101545 0.43 4119457 39 17629 4094357 0.43 4111986 40 17571 4093611 0.43 4111182 41 17753 4088007 0.43 4105760 42 17742 4081861 0.43 4099603 43 17526 4077109 0.43 4094635 44 17757 4077674 0.43 4095431 45 17394 4071038 0.43 4088432 46 17742 4071977 0.43 4089719 47 17583 4069690 0.43 4087273 48 17565 4066254 0.43 4083819 49 17772 4063091 0.44 4080863 50 17633 4052755 0.43 4070388 51 17385 4047534 0.43 4064919 52 17390 4043073 0.43 4060463 53 17644 4042510 0.43 4060154 54 17268 4036495 0.43 4053763 55 17360 4036201 0.43 4053561 56 17598 4034091 0.43 4051689 57 17257 4029321 0.43 4046578 58 17262 4025337 0.43 4042599 59 17231 4012737 0.43 4029968 60 17013 4003832 0.42 4020845 61 17317 3998410 0.43 4015727 62 16991 3992147 0.42 4009138 63 17217 3984042 0.43 4001259 64 17098 3976913 0.43 3994011 65 16914 3973349 0.42 3990263 66 16588 3969449 0.42 3986037 67 16883 3962526 0.42 3979409 68 16844 3958556 0.42 3975400 69 16912 3944445 0.43 3961357 70 17032 3928142 0.43 3945174 71 16839 3918899 0.43 3935738 72 16736 3913422 0.43 3930158 73 16649 3898942 0.43 3915591 74 16473 3890865 0.42 3907338 75 16395 3875796 0.42 3892191 76 16359 3868030 0.42 3884389 77 16389 3858030 0.42 3874419 78 16367 3844449 0.42 3860816 79 16410 3827788 0.43 3844198 80 15948 3808931 0.42 3824879 81 16421 3793952 0.43 3810373 82 16085 3778162 0.42 3794247 83 15789 3749401 0.42 3765190 84 15702 3721535 0.42 3737237 85 15326 3683895 0.41 3699221 86 15364 3663906 0.42 3679270 87 15288 3634411 0.42 3649699 88 14477 3597191 0.40 3611668 89 12211 3531340 0.34 3543551 90 9195 0 100.00 9195