CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 121541 707225 14.67 828766 2 78575 486100 13.92 564675 3 87801 679959 11.44 767760 4 92003 697351 11.66 789354 5 92106 684928 11.85 777034 6 95728 733033 11.55 828761 7 89587 667627 11.83 757214 8 91665 708803 11.45 800468 9 94054 715854 11.61 809908 10 90349 703799 11.38 794148 11 91900 708861 11.48 800761 12 91569 701759 11.54 793328 13 92179 703290 11.59 795469 14 92738 711211 11.54 803949 15 93617 712558 11.61 806175 16 94036 718418 11.57 812454 17 93800 722196 11.50 815996 18 95032 726579 11.57 821611 19 94902 728955 11.52 823857 20 95927 730954 11.60 826881 21 96518 734846 11.61 831364 22 96293 732846 11.61 829139 23 95977 734020 11.56 829997 24 96828 736149 11.62 832977 25 97326 739738 11.63 837064 26 96909 739256 11.59 836165 27 96747 743516 11.51 840263 28 96952 744226 11.53 841178 29 97261 744838 11.55 842099 30 97861 745583 11.60 843444 31 97652 744346 11.60 841998 32 97630 744176 11.60 841806 33 97789 746418 11.58 844207 34 97641 743488 11.61 841129 35 97889 745977 11.60 843866 36 98308 749571 11.59 847879 37 98100 749071 11.58 847171 38 97944 749767 11.55 847711 39 98358 749712 11.60 848070 40 98776 751264 11.62 850040 41 98215 749353 11.59 847568 42 98531 750848 11.60 849379 43 99026 750410 11.66 849436 44 98670 747176 11.67 845846 45 98292 752067 11.56 850359 46 98486 749813 11.61 848299 47 98923 750483 11.65 849406 48 99226 753479 11.64 852705 49 98736 750124 11.63 848860 50 97987 747833 11.58 845820 51 98370 749639 11.60 848009 52 98368 748783 11.61 847151 53 98519 747081 11.65 845600 54 98794 747584 11.67 846378 55 98249 746770 11.63 845019 56 98271 745084 11.65 843355 57 98377 747124 11.64 845501 58 98302 745910 11.64 844212 59 97482 742939 11.60 840421 60 98364 746104 11.65 844468 61 97621 744809 11.59 842430 62 97681 740477 11.65 838158 63 98242 742646 11.68 840888 64 98219 741541 11.70 839760 65 97099 735931 11.66 833030 66 97564 737934 11.68 835498 67 96073 736799 11.54 832872 68 96592 734925 11.62 831517 69 97806 735934 11.73 833740 70 96865 733286 11.67 830151 71 95996 730085 11.62 826081 72 96197 730297 11.64 826494 73 96170 729179 11.65 825349 74 96566 728593 11.70 825159 75 95552 724746 11.65 820298 76 94945 721953 11.62 816898 77 94789 721224 11.62 816013 78 94933 721356 11.63 816289 79 94811 719886 11.64 814697 80 94478 715460 11.66 809938 81 93852 715872 11.59 809724 82 92869 712216 11.54 805085 83 92571 710388 11.53 802959 84 92273 706369 11.55 798642 85 91054 703259 11.46 794313 86 89283 693819 11.40 783102 87 88881 692998 11.37 781879 88 88913 689727 11.42 778640 89 87835 690216 11.29 778051 90 85657 668074 11.36 753731 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 23056 1173432 1.93 1196488 2 8854 975861 0.90 984715 3 7486 1097212 0.68 1104698 4 6649 1108335 0.60 1114984 5 5790 1102091 0.52 1107881 6 5463 1092028 0.50 1097491 7 5359 1091689 0.49 1097048 8 5270 1111523 0.47 1116793 9 5080 1109394 0.46 1114474 10 4933 1097067 0.45 1102000 11 4983 1094769 0.45 1099752 12 4908 1103179 0.44 1108087 13 4921 1102912 0.44 1107833 14 5003 1111613 0.45 1116616 15 4950 1113113 0.44 1118063 16 4973 1118028 0.44 1123001 17 4914 1119912 0.44 1124826 18 4882 1126427 0.43 1131309 19 5284 1129823 0.47 1135107 20 5018 1131194 0.44 1136212 21 4989 1135916 0.44 1140905 22 5158 1139023 0.45 1144181 23 5140 1138297 0.45 1143437 24 5035 1143371 0.44 1148406 25 5279 1142702 0.46 1147981 26 5146 1140755 0.45 1145901 27 5206 1146212 0.45 1151418 28 5145 1145645 0.45 1150790 29 5094 1144685 0.44 1149779 30 5156 1149799 0.45 1154955 31 5128 1149245 0.44 1154373 32 5113 1150377 0.44 1155490 33 5180 1151215 0.45 1156395 34 5246 1151931 0.45 1157177 35 5084 1149180 0.44 1154264 36 5298 1152877 0.46 1158175 37 5138 1152232 0.44 1157370 38 5239 1150734 0.45 1155973 39 5187 1154479 0.45 1159666 40 5045 1150509 0.44 1155554 41 5247 1151010 0.45 1156257 42 5254 1154385 0.45 1159639 43 5198 1154603 0.45 1159801 44 5267 1152545 0.45 1157812 45 5281 1154610 0.46 1159891 46 5207 1153076 0.45 1158283 47 5162 1150553 0.45 1155715 48 5448 1153811 0.47 1159259 49 5249 1149876 0.45 1155125 50 5281 1149478 0.46 1154759 51 5283 1148916 0.46 1154199 52 5239 1149211 0.45 1154450 53 5203 1148573 0.45 1153776 54 5284 1148976 0.46 1154260 55 5148 1148449 0.45 1153597 56 5133 1144102 0.45 1149235 57 5138 1143879 0.45 1149017 58 5232 1142554 0.46 1147786 59 5087 1141529 0.44 1146616 60 5129 1143209 0.45 1148338 61 5086 1138384 0.44 1143470 62 5140 1138061 0.45 1143201 63 5161 1137492 0.45 1142653 64 5240 1136507 0.46 1141747 65 5203 1133481 0.46 1138684 66 5196 1131281 0.46 1136477 67 5106 1131296 0.45 1136402 68 5052 1125698 0.45 1130750 69 5102 1126697 0.45 1131799 70 5022 1123139 0.45 1128161 71 5107 1119517 0.45 1124624 72 4944 1119680 0.44 1124624 73 4947 1120019 0.44 1124966 74 5109 1111922 0.46 1117031 75 4951 1109236 0.44 1114187 76 5091 1106627 0.46 1111718 77 5017 1103188 0.45 1108205 78 4965 1102946 0.45 1107911 79 4860 1099799 0.44 1104659 80 5484 1095249 0.50 1100733 81 4919 1094049 0.45 1098968 82 5029 1089969 0.46 1094998 83 4888 1084807 0.45 1089695 84 4922 1082796 0.45 1087718 85 4956 1078914 0.46 1083870 86 4812 1063072 0.45 1067884 87 4814 1060876 0.45 1065690 88 4783 1059848 0.45 1064631 89 4808 1054953 0.45 1059761 90 4973 1036004 0.48 1040977 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 90269 4578247 1.93 4668516 2 36176 3885119 0.92 3921295 3 29332 4187978 0.70 4217310 4 24369 4158634 0.58 4183003 5 21176 4118767 0.51 4139943 6 20827 4260832 0.49 4281659 7 19528 4159538 0.47 4179066 8 19336 4231845 0.45 4251181 9 19178 4246851 0.45 4266029 10 18701 4211920 0.44 4230621 11 18827 4242204 0.44 4261031 12 18436 4216206 0.44 4234642 13 18145 4181957 0.43 4200102 14 17994 4197449 0.43 4215443 15 18065 4197449 0.43 4215514 16 17917 4208733 0.42 4226650 17 18435 4214571 0.44 4233006 18 18336 4242613 0.43 4260949 19 18850 4240419 0.44 4259269 20 18404 4244500 0.43 4262904 21 18224 4248824 0.43 4267048 22 18371 4243114 0.43 4261485 23 18258 4228920 0.43 4247178 24 17877 4230137 0.42 4248014 25 18208 4225873 0.43 4244081 26 18382 4223377 0.43 4241759 27 18518 4234031 0.44 4252549 28 18291 4233384 0.43 4251675 29 18214 4233121 0.43 4251335 30 18316 4239438 0.43 4257754 31 18451 4235009 0.43 4253460 32 18128 4220893 0.43 4239021 33 18426 4228438 0.43 4246864 34 18032 4223530 0.43 4241562 35 18493 4213390 0.44 4231883 36 18537 4222631 0.44 4241168 37 18436 4219948 0.43 4238384 38 18456 4208990 0.44 4227446 39 18327 4222518 0.43 4240845 40 18510 4223722 0.44 4242232 41 18364 4213848 0.43 4232212 42 18735 4221456 0.44 4240191 43 18182 4214769 0.43 4232951 44 18314 4204699 0.43 4223013 45 18176 4208106 0.43 4226282 46 17929 4202370 0.42 4220299 47 18186 4199002 0.43 4217188 48 18473 4200438 0.44 4218911 49 18367 4192488 0.44 4210855 50 18419 4186161 0.44 4204580 51 18394 4190370 0.44 4208764 52 18289 4183204 0.44 4201493 53 18564 4173452 0.44 4192016 54 18259 4181077 0.43 4199336 55 18236 4173072 0.44 4191308 56 18042 4161749 0.43 4179791 57 18064 4167687 0.43 4185751 58 18268 4159237 0.44 4177505 59 18006 4154007 0.43 4172013 60 18179 4152440 0.44 4170619 61 18299 4141935 0.44 4160234 62 18226 4135750 0.44 4153976 63 17934 4130865 0.43 4148799 64 18050 4121992 0.44 4140042 65 18089 4111191 0.44 4129280 66 18250 4111299 0.44 4129549 67 18225 4101947 0.44 4120172 68 17932 4093024 0.44 4110956 69 17815 4091493 0.43 4109308 70 17882 4087055 0.44 4104937 71 18038 4071135 0.44 4089173 72 17677 4067959 0.43 4085636 73 18000 4056269 0.44 4074269 74 17626 4035788 0.43 4053414 75 17991 4032548 0.44 4050539 76 17640 4021003 0.44 4038643 77 17725 4013641 0.44 4031366 78 17601 4017011 0.44 4034612 79 17389 4010230 0.43 4027619 80 19141 3990600 0.48 4009741 81 17423 3988458 0.43 4005881 82 17602 3981099 0.44 3998701 83 17346 3967712 0.44 3985058 84 17518 3960135 0.44 3977653 85 17297 3949049 0.44 3966346 86 17133 3918344 0.44 3935477 87 17049 3914224 0.43 3931273 88 16992 3889072 0.44 3906064 89 16809 3852358 0.43 3869167 90 16562 3737882 0.44 3754444 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 16595 998043 1.64 1014638 2 47776 749170 5.99 796946 3 60422 485289 11.07 545711 4 72385 678178 9.64 750563 5 77738 693865 10.07 771603 6 79299 668153 10.61 747452 7 83127 714053 10.43 797180 8 77096 648752 10.62 725848 9 79830 681387 10.49 761217 10 81400 683569 10.64 764969 11 81579 670676 10.84 752255 12 82490 675629 10.88 758119 13 83143 666187 11.10 749330 14 83288 670308 11.05 753596 15 84553 675681 11.12 760234 16 85371 676601 11.20 761972 17 86143 680776 11.23 766919 18 86544 681450 11.27 767994 19 86955 688491 11.21 775446 20 87954 691447 11.28 779401 21 87631 691492 11.25 779123 22 88118 693471 11.27 781589 23 88320 691866 11.32 780186 24 87757 690790 11.27 778547 25 88868 693612 11.36 782480 26 86939 691716 11.17 778655 27 89172 692914 11.40 782086 28 88995 695238 11.35 784233 29 88906 695923 11.33 784829 30 88971 695445 11.34 784416 31 89462 694798 11.41 784260 32 89584 695065 11.42 784649 33 89150 691881 11.41 781031 34 89954 692089 11.50 782043 35 89856 690602 11.51 780458 36 89903 689314 11.54 779217 37 90024 692497 11.50 782521 38 89684 692304 11.47 781988 39 90500 691240 11.58 781740 40 90334 690839 11.56 781173 41 90487 691353 11.57 781840 42 90657 688521 11.63 779178 43 90924 691168 11.63 782092 44 91003 690027 11.65 781030 45 91039 684748 11.74 775787 46 90641 688960 11.63 779601 47 90577 688480 11.63 779057 48 90669 685984 11.67 776653 49 90892 687780 11.67 778672 50 90910 687511 11.68 778421 51 90344 683733 11.67 774077 52 90456 685051 11.66 775507 53 91063 684068 11.75 775131 54 87492 681531 11.38 769023 55 90342 682659 11.69 773001 56 91052 681790 11.78 772842 57 90375 681240 11.71 771615 58 91256 681862 11.80 773118 59 90850 681196 11.77 772046 60 90398 678795 11.75 769193 61 90634 678319 11.79 768953 62 90568 679270 11.76 769838 63 90539 674868 11.83 765407 64 90773 678314 11.80 769087 65 90694 677903 11.80 768597 66 90505 674385 11.83 764890 67 90163 674103 11.80 764266 68 90468 674130 11.83 764598 69 90005 670649 11.83 760654 70 89896 673112 11.78 763008 71 90217 672318 11.83 762535 72 90378 668991 11.90 759369 73 90150 670612 11.85 760762 74 90557 669698 11.91 760255 75 89561 666636 11.84 756197 76 89656 666544 11.86 756200 77 89672 665030 11.88 754702 78 89664 664627 11.89 754291 79 89738 665034 11.89 754772 80 89082 663272 11.84 752354 81 89242 661099 11.89 750341 82 89089 660727 11.88 749816 83 88758 659620 11.86 748378 84 88066 656119 11.83 744185 85 87822 655673 11.81 743495 86 86931 653385 11.74 740316 87 86974 650355 11.80 737329 88 86479 650036 11.74 736515 89 85752 644692 11.74 730444 90 82175 0 100.00 82175 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12465 836376 1.47 848841 2 11962 1281038 0.93 1293000 3 7283 1178219 0.61 1185502 4 5142 932244 0.55 937386 5 5132 1046603 0.49 1051735 6 5315 1094633 0.48 1099948 7 5186 1055509 0.49 1060695 8 4923 1058047 0.46 1062970 9 4800 1037509 0.46 1042309 10 4575 1046525 0.44 1051100 11 4825 1052043 0.46 1056868 12 4701 1036620 0.45 1041321 13 4563 1032515 0.44 1037078 14 4670 1041526 0.45 1046196 15 4576 1043324 0.44 1047900 16 4770 1046879 0.45 1051649 17 4732 1049315 0.45 1054047 18 4845 1052011 0.46 1056856 19 4842 1053668 0.46 1058510 20 4886 1062685 0.46 1067571 21 4758 1063059 0.45 1067817 22 4771 1061631 0.45 1066402 23 4816 1065892 0.45 1070708 24 4913 1070094 0.46 1075007 25 4827 1064502 0.45 1069329 26 4981 1063856 0.47 1068837 27 4839 1069979 0.45 1074818 28 4768 1067171 0.44 1071939 29 4902 1069642 0.46 1074544 30 4824 1071687 0.45 1076511 31 4831 1066541 0.45 1071372 32 4830 1070245 0.45 1075075 33 4794 1070824 0.45 1075618 34 4648 1065919 0.43 1070567 35 4833 1067913 0.45 1072746 36 4774 1067519 0.45 1072293 37 4811 1062713 0.45 1067524 38 4790 1067075 0.45 1071865 39 4806 1065417 0.45 1070223 40 4837 1061743 0.45 1066580 41 4839 1060852 0.45 1065691 42 4921 1062249 0.46 1067170 43 4893 1057185 0.46 1062078 44 4849 1063454 0.45 1068303 45 4844 1059911 0.45 1064755 46 4805 1056874 0.45 1061679 47 4773 1060468 0.45 1065241 48 4859 1058072 0.46 1062931 49 4879 1053321 0.46 1058200 50 4738 1057388 0.45 1062126 51 4804 1053715 0.45 1058519 52 4716 1048176 0.45 1052892 53 4618 1051078 0.44 1055696 54 4667 1051470 0.44 1056137 55 4755 1047060 0.45 1051815 56 4716 1051348 0.45 1056064 57 4751 1048652 0.45 1053403 58 4704 1046492 0.45 1051196 59 4718 1047889 0.45 1052607 60 4916 1044711 0.47 1049627 61 4650 1041812 0.44 1046462 62 4592 1044276 0.44 1048868 63 4629 1040941 0.44 1045570 64 4788 1038305 0.46 1043093 65 4735 1041866 0.45 1046601 66 4667 1039206 0.45 1043873 67 4691 1035139 0.45 1039830 68 4691 1037716 0.45 1042407 69 4654 1034833 0.45 1039487 70 4763 1032179 0.46 1036942 71 4764 1031887 0.46 1036651 72 4612 1031829 0.44 1036441 73 4681 1026915 0.45 1031596 74 4634 1029440 0.45 1034074 75 4580 1026540 0.44 1031120 76 4682 1024148 0.46 1028830 77 4656 1025770 0.45 1030426 78 4636 1022469 0.45 1027105 79 4484 1017817 0.44 1022301 80 4667 1018142 0.46 1022809 81 4539 1019176 0.44 1023715 82 4666 1014795 0.46 1019461 83 4628 1013754 0.45 1018382 84 4555 1012503 0.45 1017058 85 4666 1004437 0.46 1009103 86 4537 1007380 0.45 1011917 87 4430 1001906 0.44 1006336 88 4348 996312 0.43 1000660 89 3714 991736 0.37 995450 90 3007 0 100.00 3007 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 52752 3496742 1.49 3549494 2 36431 3905395 0.92 3941826 3 25942 3984594 0.65 4010536 4 22810 4218426 0.54 4241236 5 20579 4108708 0.50 4129287 6 19453 4102254 0.47 4121707 7 18997 4160970 0.45 4179967 8 17955 3969199 0.45 3987154 9 18030 4033635 0.45 4051665 10 17384 3985133 0.43 4002517 11 17321 3947648 0.44 3964969 12 16919 3929104 0.43 3946023 13 16971 3881079 0.44 3898050 14 16585 3902136 0.42 3918721 15 16936 3916190 0.43 3933126 16 16995 3921139 0.43 3938134 17 17339 3926536 0.44 3943875 18 17275 3926073 0.44 3943348 19 17230 3924570 0.44 3941800 20 17141 3916864 0.44 3934005 21 17051 3916272 0.43 3933323 22 17345 3903155 0.44 3920500 23 17166 3900018 0.44 3917184 24 17249 3897573 0.44 3914822 25 17138 3902049 0.44 3919187 26 17449 3878514 0.45 3895963 27 17010 3898134 0.43 3915144 28 17046 3897769 0.44 3914815 29 17209 3894680 0.44 3911889 30 17071 3884058 0.44 3901129 31 17075 3875611 0.44 3892686 32 16954 3870317 0.44 3887271 33 17107 3864369 0.44 3881476 34 16867 3860562 0.44 3877429 35 17214 3858851 0.44 3876065 36 17000 3854121 0.44 3871121 37 16856 3854524 0.44 3871380 38 16701 3848832 0.43 3865533 39 16988 3839492 0.44 3856480 40 17067 3834731 0.44 3851798 41 16859 3829372 0.44 3846231 42 16945 3817715 0.44 3834660 43 16773 3815566 0.44 3832339 44 16638 3807332 0.44 3823970 45 16826 3804554 0.44 3821380 46 16696 3800133 0.44 3816829 47 16831 3798666 0.44 3815497 48 16614 3796956 0.44 3813570 49 16758 3791028 0.44 3807786 50 16502 3782960 0.43 3799462 51 16547 3778323 0.44 3794870 52 16501 3771316 0.44 3787817 53 16328 3769117 0.43 3785445 54 15853 3764205 0.42 3780058 55 16416 3762050 0.43 3778466 56 16588 3759081 0.44 3775669 57 16387 3753755 0.43 3770142 58 16334 3754503 0.43 3770837 59 16146 3745530 0.43 3761676 60 16359 3743991 0.44 3760350 61 16207 3736928 0.43 3753135 62 16206 3731086 0.43 3747292 63 16430 3725110 0.44 3741540 64 16261 3718499 0.44 3734760 65 16179 3714291 0.43 3730470 66 16307 3711288 0.44 3727595 67 16214 3712478 0.43 3728692 68 16080 3706243 0.43 3722323 69 15883 3696940 0.43 3712823 70 16299 3688896 0.44 3705195 71 16078 3689315 0.43 3705393 72 15942 3677616 0.43 3693558 73 15632 3677798 0.42 3693430 74 15860 3666412 0.43 3682272 75 15984 3659323 0.43 3675307 76 15710 3659538 0.43 3675248 77 15904 3654460 0.43 3670364 78 15942 3649452 0.43 3665394 79 15911 3646736 0.43 3662647 80 15732 3632240 0.43 3647972 81 15704 3625823 0.43 3641527 82 15704 3616320 0.43 3632024 83 15872 3609338 0.44 3625210 84 15751 3594549 0.44 3610300 85 15549 3579589 0.43 3595138 86 15268 3577695 0.42 3592963 87 15453 3571439 0.43 3586892 88 14758 3565116 0.41 3579874 89 12676 3535798 0.36 3548474 90 9985 0 100.00 9985