ERR13913501.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 35879017 lines in total Total number of methylation call strings processed: 71758034 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1423217911 Total methylated C's in CpG context: 20868911 Total methylated C's in CHG context: 2109120 Total methylated C's in CHH context: 8655838 Total C to T conversions in CpG context: 151585742 Total C to T conversions in CHG context: 237703153 Total C to T conversions in CHH context: 1002295147 C methylated in CpG context: 12.1% C methylated in non-CpG context: 0.9%