ERR13913491.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 47268768 lines in total Total number of methylation call strings processed: 94537536 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2149903126 Total methylated C's in CpG context: 29727662 Total methylated C's in CHG context: 840902 Total methylated C's in CHH context: 2851595 Total C to T conversions in CpG context: 225596436 Total C to T conversions in CHG context: 354776731 Total C to T conversions in CHH context: 1536109800 C methylated in CpG context: 11.6% C methylated in non-CpG context: 0.2%