ERR13913490.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 44546971 lines in total Total number of methylation call strings processed: 89093942 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1992496946 Total methylated C's in CpG context: 26792007 Total methylated C's in CHG context: 890046 Total methylated C's in CHH context: 3086236 Total C to T conversions in CpG context: 209746165 Total C to T conversions in CHG context: 329050788 Total C to T conversions in CHH context: 1422931704 C methylated in CpG context: 11.3% C methylated in non-CpG context: 0.2%