ERR13913488.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 52487670 lines in total Total number of methylation call strings processed: 104975340 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2366978502 Total methylated C's in CpG context: 31751271 Total methylated C's in CHG context: 975502 Total methylated C's in CHH context: 3366550 Total C to T conversions in CpG context: 249312608 Total C to T conversions in CHG context: 390433910 Total C to T conversions in CHH context: 1691138661 C methylated in CpG context: 11.3% C methylated in non-CpG context: 0.2%