ERR13913487.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 52150460 lines in total Total number of methylation call strings processed: 104300920 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2383893667 Total methylated C's in CpG context: 32492335 Total methylated C's in CHG context: 1015730 Total methylated C's in CHH context: 3531449 Total C to T conversions in CpG context: 250229092 Total C to T conversions in CHG context: 392902522 Total C to T conversions in CHH context: 1703722539 C methylated in CpG context: 11.5% C methylated in non-CpG context: 0.2%