ERR13913484.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 52354679 lines in total Total number of methylation call strings processed: 104709358 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2317871115 Total methylated C's in CpG context: 29953125 Total methylated C's in CHG context: 954578 Total methylated C's in CHH context: 3319189 Total C to T conversions in CpG context: 246049025 Total C to T conversions in CHG context: 382139203 Total C to T conversions in CHH context: 1655455995 C methylated in CpG context: 10.9% C methylated in non-CpG context: 0.2%