ERR13913481.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 42504715 lines in total Total number of methylation call strings processed: 85009430 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1934518963 Total methylated C's in CpG context: 26751676 Total methylated C's in CHG context: 825056 Total methylated C's in CHH context: 2863113 Total C to T conversions in CpG context: 202718606 Total C to T conversions in CHG context: 319786105 Total C to T conversions in CHH context: 1381574407 C methylated in CpG context: 11.7% C methylated in non-CpG context: 0.2%