ERR13913480.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 40716712 lines in total Total number of methylation call strings processed: 81433424 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1806960918 Total methylated C's in CpG context: 24087809 Total methylated C's in CHG context: 981870 Total methylated C's in CHH context: 3621720 Total C to T conversions in CpG context: 189729145 Total C to T conversions in CHG context: 297564757 Total C to T conversions in CHH context: 1290975617 C methylated in CpG context: 11.3% C methylated in non-CpG context: 0.3%