ERR13913479.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 43119372 lines in total Total number of methylation call strings processed: 86238744 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1984089849 Total methylated C's in CpG context: 27885376 Total methylated C's in CHG context: 839939 Total methylated C's in CHH context: 2903918 Total C to T conversions in CpG context: 207751232 Total C to T conversions in CHG context: 327331028 Total C to T conversions in CHH context: 1417378356 C methylated in CpG context: 11.8% C methylated in non-CpG context: 0.2%