ERR13913476.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 72071685 lines in total Total number of methylation call strings processed: 144143370 Final Cytosine Methylation Report ================================= Total number of C's analysed: 3199344777 Total methylated C's in CpG context: 41723857 Total methylated C's in CHG context: 1616775 Total methylated C's in CHH context: 5883851 Total C to T conversions in CpG context: 338062684 Total C to T conversions in CHG context: 527121858 Total C to T conversions in CHH context: 2284935752 C methylated in CpG context: 11.0% C methylated in non-CpG context: 0.3%