ERR13913475.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 44897099 lines in total Total number of methylation call strings processed: 89794198 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2074680532 Total methylated C's in CpG context: 28032757 Total methylated C's in CHG context: 868989 Total methylated C's in CHH context: 3034691 Total C to T conversions in CpG context: 217661714 Total C to T conversions in CHG context: 342868871 Total C to T conversions in CHH context: 1482213510 C methylated in CpG context: 11.4% C methylated in non-CpG context: 0.2%