ERR13913473.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 49293766 lines in total Total number of methylation call strings processed: 98587532 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2285656482 Total methylated C's in CpG context: 31934597 Total methylated C's in CHG context: 972803 Total methylated C's in CHH context: 3356286 Total C to T conversions in CpG context: 238190776 Total C to T conversions in CHG context: 377009842 Total C to T conversions in CHH context: 1634192178 C methylated in CpG context: 11.8% C methylated in non-CpG context: 0.2%