ERR13913470.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 41817848 lines in total Total number of methylation call strings processed: 83635696 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1876829354 Total methylated C's in CpG context: 25051587 Total methylated C's in CHG context: 808294 Total methylated C's in CHH context: 2816595 Total C to T conversions in CpG context: 197759025 Total C to T conversions in CHG context: 310058806 Total C to T conversions in CHH context: 1340335047 C methylated in CpG context: 11.2% C methylated in non-CpG context: 0.2%