ERR13913467.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 44043141 lines in total Total number of methylation call strings processed: 88086282 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2018148940 Total methylated C's in CpG context: 26999325 Total methylated C's in CHG context: 915619 Total methylated C's in CHH context: 3253310 Total C to T conversions in CpG context: 211807274 Total C to T conversions in CHG context: 332156942 Total C to T conversions in CHH context: 1443016470 C methylated in CpG context: 11.3% C methylated in non-CpG context: 0.2%