ERR13913464.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 51479631 lines in total Total number of methylation call strings processed: 102959262 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2319120168 Total methylated C's in CpG context: 30664974 Total methylated C's in CHG context: 957692 Total methylated C's in CHH context: 3339375 Total C to T conversions in CpG context: 244671767 Total C to T conversions in CHG context: 382717434 Total C to T conversions in CHH context: 1656768926 C methylated in CpG context: 11.1% C methylated in non-CpG context: 0.2%