ERR13913463.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 45445701 lines in total Total number of methylation call strings processed: 90891402 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2052661096 Total methylated C's in CpG context: 27746214 Total methylated C's in CHG context: 885681 Total methylated C's in CHH context: 3078238 Total C to T conversions in CpG context: 216193233 Total C to T conversions in CHG context: 338825455 Total C to T conversions in CHH context: 1465932275 C methylated in CpG context: 11.4% C methylated in non-CpG context: 0.2%