SUMMARISING RUN PARAMETERS
==========================
Input filename: SRR13207071_1.fastq.gz
Trimming mode: paired-end
Trim Galore version: 0.6.10
Cutadapt version: 4.2
Python version: could not detect
Number of cores used for trimming: 2
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Using Illumina adapter for trimming (count: 17). Second best hit was Nextera (count: 0)
Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
Output file will be GZIP compressed


This is cutadapt 4.2 with Python 3.10.8
Command line parameters: -j 2 -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC SRR13207071_1.fastq.gz
Processing single-end reads on 2 cores ...
Finished in 849.278 s (16.262 µs/read; 3.69 M reads/minute).

=== Summary ===

Total reads processed:              52,225,074
Reads with adapters:                22,053,906 (42.2%)
Reads written (passing filters):    52,225,074 (100.0%)

Total basepairs processed: 6,553,667,817 bp
Quality-trimmed:               1,729,636 bp (0.0%)
Total written (filtered):  6,525,541,744 bp (99.6%)

=== Adapter 1 ===

Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 22053906 times

Minimum overlap: 1
No. of allowed errors:
1-9 bp: 0; 10-13 bp: 1

Bases preceding removed adapters:
  A: 44.9%
  C: 10.2%
  G: 6.6%
  T: 38.2%
  none/other: 0.0%

Overview of removed sequences
length	count	expect	max.err	error counts
1	19424719	13056268.5	0	19424719
2	1730165	3264067.1	0	1730165
3	461077	816016.8	0	461077
4	305022	204004.2	0	305022
5	70710	51001.0	0	70710
6	17504	12750.3	0	17504
7	12989	3187.6	0	12989
8	10246	796.9	0	10246
9	2676	199.2	0	2190 486
10	17881	49.8	1	16641 1240
11	149	12.5	1	16 133
12	40	3.1	1	8 32
13	4	0.8	1	1 3
14	1	0.8	1	0 1
16	3	0.8	1	1 2
17	2	0.8	1	1 1
18	5	0.8	1	0 5
19	5	0.8	1	2 3
20	1	0.8	1	0 1
21	2	0.8	1	0 2
22	4	0.8	1	0 4
23	4	0.8	1	2 2
24	1	0.8	1	1
25	4	0.8	1	2 2
26	2	0.8	1	1 1
27	4	0.8	1	0 4
28	2	0.8	1	0 2
29	2	0.8	1	1 1
30	3	0.8	1	0 3
31	3	0.8	1	2 1
32	2	0.8	1	0 2
33	3	0.8	1	2 1
34	1	0.8	1	0 1
35	5	0.8	1	5
36	1	0.8	1	1
38	2	0.8	1	2
39	5	0.8	1	2 3
40	3	0.8	1	2 1
41	2	0.8	1	0 2
42	3	0.8	1	2 1
43	2	0.8	1	1 1
44	2	0.8	1	1 1
45	2	0.8	1	2
46	3	0.8	1	1 2
47	1	0.8	1	1
48	3	0.8	1	1 2
49	8	0.8	1	7 1
50	3	0.8	1	3
52	1	0.8	1	1
53	2	0.8	1	0 2
54	3	0.8	1	2 1
55	2	0.8	1	0 2
56	6	0.8	1	3 3
57	2	0.8	1	2
58	3	0.8	1	2 1
59	2	0.8	1	2
60	2	0.8	1	2
61	1	0.8	1	1
62	2	0.8	1	2
63	1	0.8	1	1
64	4	0.8	1	2 2
65	3	0.8	1	2 1
66	11	0.8	1	9 2
67	3	0.8	1	3
68	2	0.8	1	1 1
70	2	0.8	1	2
71	3	0.8	1	1 2
72	7	0.8	1	7
73	2	0.8	1	1 1
74	6	0.8	1	3 3
75	3	0.8	1	2 1
76	4	0.8	1	3 1
77	1	0.8	1	1
78	4	0.8	1	4
79	4	0.8	1	3 1
80	5	0.8	1	5
81	4	0.8	1	3 1
82	2	0.8	1	2
83	4	0.8	1	4
84	6	0.8	1	6
85	3	0.8	1	2 1
86	5	0.8	1	2 3
87	4	0.8	1	2 2
88	2	0.8	1	2
89	1	0.8	1	0 1
90	2	0.8	1	0 2
91	8	0.8	1	8
92	8	0.8	1	7 1
93	3	0.8	1	2 1
94	5	0.8	1	5
95	11	0.8	1	10 1
96	10	0.8	1	5 5
97	7	0.8	1	3 4
98	11	0.8	1	9 2
99	7	0.8	1	7
100	5	0.8	1	4 1
101	6	0.8	1	5 1
102	5	0.8	1	4 1
103	4	0.8	1	3 1
104	5	0.8	1	2 3
105	8	0.8	1	8
106	4	0.8	1	4
107	13	0.8	1	11 2
108	12	0.8	1	10 2
109	3	0.8	1	3
110	12	0.8	1	10 2
111	9	0.8	1	6 3
112	4	0.8	1	1 3
113	11	0.8	1	8 3
114	12	0.8	1	11 1
115	4	0.8	1	3 1
116	10	0.8	1	9 1
117	10	0.8	1	8 2
118	8	0.8	1	5 3
119	20	0.8	1	14 6
120	14	0.8	1	10 4
121	11	0.8	1	9 2
122	10	0.8	1	6 4
123	7	0.8	1	6 1
124	10	0.8	1	6 4
125	15	0.8	1	13 2
126	11	0.8	1	11
127	6	0.8	1	5 1
128	15	0.8	1	13 2
129	17	0.8	1	12 5
130	24	0.8	1	20 4
131	23	0.8	1	21 2
132	19	0.8	1	18 1
133	25	0.8	1	20 5
134	29	0.8	1	24 5
135	30	0.8	1	15 15

RUN STATISTICS FOR INPUT FILE: SRR13207071_1.fastq.gz
=============================================
52225074 sequences processed in total