SRR13207069.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 14219101 lines in total Total number of methylation call strings processed: 28438202 Final Cytosine Methylation Report ================================= Total number of C's analysed: 397266884 Total methylated C's in CpG context: 5413244 Total methylated C's in CHG context: 604027 Total methylated C's in CHH context: 4133535 Total C to T conversions in CpG context: 44593837 Total C to T conversions in CHG context: 68364957 Total C to T conversions in CHH context: 274157284 C methylated in CpG context: 10.8% C methylated in non-CpG context: 1.4%