SRR13207064.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 10551287 lines in total Total number of methylation call strings processed: 21102574 Final Cytosine Methylation Report ================================= Total number of C's analysed: 294650447 Total methylated C's in CpG context: 3989356 Total methylated C's in CHG context: 439058 Total methylated C's in CHH context: 3033722 Total C to T conversions in CpG context: 32983880 Total C to T conversions in CHG context: 50285023 Total C to T conversions in CHH context: 203919408 C methylated in CpG context: 10.8% C methylated in non-CpG context: 1.3%