SRR13207062.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 11911854 lines in total Total number of methylation call strings processed: 23823708 Final Cytosine Methylation Report ================================= Total number of C's analysed: 333413710 Total methylated C's in CpG context: 4511804 Total methylated C's in CHG context: 489461 Total methylated C's in CHH context: 3302503 Total C to T conversions in CpG context: 37088426 Total C to T conversions in CHG context: 56822107 Total C to T conversions in CHH context: 231199409 C methylated in CpG context: 10.8% C methylated in non-CpG context: 1.3%