SRR13207061.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 11476347 lines in total Total number of methylation call strings processed: 22952694 Final Cytosine Methylation Report ================================= Total number of C's analysed: 316892265 Total methylated C's in CpG context: 4425480 Total methylated C's in CHG context: 491410 Total methylated C's in CHH context: 3393670 Total C to T conversions in CpG context: 35569934 Total C to T conversions in CHG context: 54379220 Total C to T conversions in CHH context: 218632551 C methylated in CpG context: 11.1% C methylated in non-CpG context: 1.4%