SRR13207060.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 12765305 lines in total Total number of methylation call strings processed: 25530610 Final Cytosine Methylation Report ================================= Total number of C's analysed: 349663659 Total methylated C's in CpG context: 4373919 Total methylated C's in CHG context: 503984 Total methylated C's in CHH context: 3453252 Total C to T conversions in CpG context: 38822393 Total C to T conversions in CHG context: 58182431 Total C to T conversions in CHH context: 244327680 C methylated in CpG context: 10.1% C methylated in non-CpG context: 1.3%