SRR13207059.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 14382884 lines in total Total number of methylation call strings processed: 28765768 Final Cytosine Methylation Report ================================= Total number of C's analysed: 400108906 Total methylated C's in CpG context: 5404191 Total methylated C's in CHG context: 601380 Total methylated C's in CHH context: 4129988 Total C to T conversions in CpG context: 44640768 Total C to T conversions in CHG context: 68295638 Total C to T conversions in CHH context: 277036941 C methylated in CpG context: 10.8% C methylated in non-CpG context: 1.4%