SRR13207058.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 21981694 lines in total Total number of methylation call strings processed: 43963388 Final Cytosine Methylation Report ================================= Total number of C's analysed: 616054475 Total methylated C's in CpG context: 8445634 Total methylated C's in CHG context: 914071 Total methylated C's in CHH context: 6226406 Total C to T conversions in CpG context: 68458393 Total C to T conversions in CHG context: 104640922 Total C to T conversions in CHH context: 427369049 C methylated in CpG context: 11.0% C methylated in non-CpG context: 1.3%