SRR13207056.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 14306606 lines in total Total number of methylation call strings processed: 28613212 Final Cytosine Methylation Report ================================= Total number of C's analysed: 403621340 Total methylated C's in CpG context: 5515016 Total methylated C's in CHG context: 605152 Total methylated C's in CHH context: 4133341 Total C to T conversions in CpG context: 44916685 Total C to T conversions in CHG context: 68871673 Total C to T conversions in CHH context: 279579473 C methylated in CpG context: 10.9% C methylated in non-CpG context: 1.3%