SRR13207055.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 9962955 lines in total Total number of methylation call strings processed: 19925910 Final Cytosine Methylation Report ================================= Total number of C's analysed: 276263150 Total methylated C's in CpG context: 4251309 Total methylated C's in CHG context: 431634 Total methylated C's in CHH context: 2918384 Total C to T conversions in CpG context: 30429066 Total C to T conversions in CHG context: 47204311 Total C to T conversions in CHH context: 191028446 C methylated in CpG context: 12.3% C methylated in non-CpG context: 1.4%