SRR13207054.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 15797672 lines in total Total number of methylation call strings processed: 31595344 Final Cytosine Methylation Report ================================= Total number of C's analysed: 440286031 Total methylated C's in CpG context: 6432937 Total methylated C's in CHG context: 678326 Total methylated C's in CHH context: 4634733 Total C to T conversions in CpG context: 48867042 Total C to T conversions in CHG context: 75079770 Total C to T conversions in CHH context: 304593223 C methylated in CpG context: 11.6% C methylated in non-CpG context: 1.4%