SRR13207053.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 13343481 lines in total Total number of methylation call strings processed: 26686962 Final Cytosine Methylation Report ================================= Total number of C's analysed: 371737196 Total methylated C's in CpG context: 5007515 Total methylated C's in CHG context: 562468 Total methylated C's in CHH context: 3884431 Total C to T conversions in CpG context: 41676235 Total C to T conversions in CHG context: 63711745 Total C to T conversions in CHH context: 256894802 C methylated in CpG context: 10.7% C methylated in non-CpG context: 1.4%