ERR12308528.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 17180463 lines in total Total number of methylation call strings processed: 34360926 Final Cytosine Methylation Report ================================= Total number of C's analysed: 600887169 Total methylated C's in CpG context: 19625611 Total methylated C's in CHG context: 10821591 Total methylated C's in CHH context: 27849300 Total C to T conversions in CpG context: 62652948 Total C to T conversions in CHG context: 89812544 Total C to T conversions in CHH context: 390125175 C methylated in CpG context: 23.9% C methylated in non-CpG context: 7.5%