ERR12308526.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 54291482 lines in total Total number of methylation call strings processed: 108582964 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1963703872 Total methylated C's in CpG context: 31162882 Total methylated C's in CHG context: 3770803 Total methylated C's in CHH context: 12216621 Total C to T conversions in CpG context: 205823186 Total C to T conversions in CHG context: 324786479 Total C to T conversions in CHH context: 1385943901 C methylated in CpG context: 13.1% C methylated in non-CpG context: 0.9%