ERR12308525.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 24875799 lines in total Total number of methylation call strings processed: 49751598 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1009929896 Total methylated C's in CpG context: 32153412 Total methylated C's in CHG context: 6372675 Total methylated C's in CHH context: 16264573 Total C to T conversions in CpG context: 114025697 Total C to T conversions in CHG context: 185002056 Total C to T conversions in CHH context: 656111483 C methylated in CpG context: 22.0% C methylated in non-CpG context: 2.6%