ERR12308524.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 31128698 lines in total Total number of methylation call strings processed: 62257396 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1242468654 Total methylated C's in CpG context: 41740171 Total methylated C's in CHG context: 8124944 Total methylated C's in CHH context: 20027572 Total C to T conversions in CpG context: 143040326 Total C to T conversions in CHG context: 230908875 Total C to T conversions in CHH context: 798626766 C methylated in CpG context: 22.6% C methylated in non-CpG context: 2.7%