ERR12308522.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 18038604 lines in total Total number of methylation call strings processed: 36077208 Final Cytosine Methylation Report ================================= Total number of C's analysed: 675138905 Total methylated C's in CpG context: 14651804 Total methylated C's in CHG context: 4228440 Total methylated C's in CHH context: 13183330 Total C to T conversions in CpG context: 73459330 Total C to T conversions in CHG context: 107983080 Total C to T conversions in CHH context: 461632921 C methylated in CpG context: 16.6% C methylated in non-CpG context: 3.0%