ERR12308521.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 20137021 lines in total Total number of methylation call strings processed: 40274042 Final Cytosine Methylation Report ================================= Total number of C's analysed: 681783959 Total methylated C's in CpG context: 12428621 Total methylated C's in CHG context: 2531741 Total methylated C's in CHH context: 7476214 Total C to T conversions in CpG context: 76745354 Total C to T conversions in CHG context: 108608126 Total C to T conversions in CHH context: 473993903 C methylated in CpG context: 13.9% C methylated in non-CpG context: 1.7%