ERR12308520.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 24059153 lines in total Total number of methylation call strings processed: 48118306 Final Cytosine Methylation Report ================================= Total number of C's analysed: 786711529 Total methylated C's in CpG context: 17571838 Total methylated C's in CHG context: 4695582 Total methylated C's in CHH context: 12750083 Total C to T conversions in CpG context: 86596711 Total C to T conversions in CHG context: 126214173 Total C to T conversions in CHH context: 538883142 C methylated in CpG context: 16.9% C methylated in non-CpG context: 2.6%