ERR12308519.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 21876093 lines in total Total number of methylation call strings processed: 43752186 Final Cytosine Methylation Report ================================= Total number of C's analysed: 845004761 Total methylated C's in CpG context: 21960025 Total methylated C's in CHG context: 1765644 Total methylated C's in CHH context: 4854327 Total C to T conversions in CpG context: 97160121 Total C to T conversions in CHG context: 155651641 Total C to T conversions in CHH context: 563613003 C methylated in CpG context: 18.4% C methylated in non-CpG context: 0.9%