ERR12308518.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 13834679 lines in total Total number of methylation call strings processed: 27669358 Final Cytosine Methylation Report ================================= Total number of C's analysed: 490981635 Total methylated C's in CpG context: 12822103 Total methylated C's in CHG context: 1873579 Total methylated C's in CHH context: 4811295 Total C to T conversions in CpG context: 55655710 Total C to T conversions in CHG context: 85980483 Total C to T conversions in CHH context: 329838465 C methylated in CpG context: 18.7% C methylated in non-CpG context: 1.6%