ERR12308517.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 22587606 lines in total Total number of methylation call strings processed: 45175212 Final Cytosine Methylation Report ================================= Total number of C's analysed: 826296336 Total methylated C's in CpG context: 30127405 Total methylated C's in CHG context: 9624554 Total methylated C's in CHH context: 25268613 Total C to T conversions in CpG context: 89972192 Total C to T conversions in CHG context: 145258579 Total C to T conversions in CHH context: 526044993 C methylated in CpG context: 25.1% C methylated in non-CpG context: 4.9%