ERR12308516.dedup.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 15130087 lines in total Total number of methylation call strings processed: 30260174 Final Cytosine Methylation Report ================================= Total number of C's analysed: 519985278 Total methylated C's in CpG context: 8842937 Total methylated C's in CHG context: 1569008 Total methylated C's in CHH context: 4412327 Total C to T conversions in CpG context: 59324236 Total C to T conversions in CHG context: 83701863 Total C to T conversions in CHH context: 362134907 C methylated in CpG context: 13.0% C methylated in non-CpG context: 1.3%